A lot of scientists are kind, careful and caring

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I just returned from a tremendous meeting of the Entomological Society of America. I experienced a lot of moving moments.

I attended my first EntSoc meeting twenty years ago, as an early grad student. I’ve skipped the last few years (because family). This return brought a flush of friends and close colleagues that I don’t see on a regular basis. I got to meet PhD students who are being advised by my own former undergrad students. When I was in grad school, my advisor had two small kids. At this meeting, I got to see his older daughter, now in a MD/PhD program.

There are so many scientists who made a difference in my life — professionally and personally —  and having so many of them gathered under one large roof was overwhelming. Continue reading

The sabbatical isn’t what it used to be

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Before I was a professor, I had heard of sabbaticals. That’s when a professor spends a year away from the university and visits a distant land to gain new skills, build new projects, and make new connections.

Then I became a professor and learned that (most) universities don’t pay for a full year of sabbatical, they only pay for one semester. They’ll let you take a year, but at half of the pay. So finding a half-year of salary from grants is needed for a full sabbatical.

Then I became eligible for a couple sabbaticals, and experienced how the travel-to-far-lands part isn’t necessarily what happens either. Continue reading

Recommended reads #64

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If you haven’t been watching the news lately, you might not have noticed that the United States is in the midst of a national moment in which university students are speaking and acting out in response to the perennial marginalization of minorities. I imagine more things will emerge, but here is the rundown from a few campuses:

At Mizzou, years of administrative disregard for an environment that minimizes and threatens black students came to a boil with a particularly hateful action that was met with the same do-nothing attitude by the President and the Chancellor. The football team went on strike, and then, in a jiffy, the President and Chancellor stepped down. Since then, protests have grown. Here’s a clear take on the strike at Mizzou this from Dave Zirin, who writes about the intersection of sports and politics. (also, HK and I talk about the Mizzou situation at length in the Not Just Scientists episode coming out this weekend) Continue reading

Why I avoid lecturing

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Academic freedom is glorious. Despite pronouncements to the contrary, university faculty — including most contingent faculty — enjoy tremendous freedom in what we teach and how we teach it. Most professors teach however the hell they choose to teach.

Academic freedom enables change, but resists rapid change. Faculty have the liberty to stand aside as change happens. We can stand by and snark as fads wash by. We also can fossilize as the landscape truly changes. I think it’s hard, in the moment, to distinguish between a fad and a change in the landscape. Continue reading

Choosing between “head of lab” and “independent scholar” models

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When people ask how I run my lab group, I don’t know how to respond. It boggles me because these perfectly normal questions often have assumptions baked into them, about my university, my students, and the kind of work that happens in my lab.

It’s only natural that folks might compare my “undergraduate research lab” to the template of major research institution lab, most of which also feature undergrads in substantial roles.

The way I run my research program, and the students involved, is probably different than you might imagine unless you’ve spent a bunch of time at an underfunded regional state university like mine. Continue reading

Recommended reads #63

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The New York Times published a stunning piece about what is happening to the Greenland ice sheet. It’s an extraordinary piece of journalism and a really important read. Especially if you live somewhere that’s not too far above sea level.

How to Not Drop Out of Grad School. Like everything else I’ve read in Mary Anning’s Revenge, this is great. It’s about how to take care of yourself, and be a happy and balanced person. Working long hours consistently doesn’t make you more productive.

The Odds That a Panel Would ‘Randomly’ Be All Men Are Astronomical

The Frontiers series of journals is now on Beall’s list as a possible predatory series of journals. Here’s a long take on the how/why/what of this move. Beall’s List of predatory publishers — created and run by a rogue librarian — is a useful service for academia, but I am reluctant to even mention, much less endorse, the List because it’s clear that Beall really doesn’t understand the distinction between predatory publishing and open access publishing. Or, if he does understand the distinction, he is deliberately conflating the two because of his social and political views on the value of the for-profit scientific publishing industry. It’s a hot mess and I hope that someone — Retraction Watch maybe? — can step in to keep tabs on predatory publishers instead of leaving these judgments to a source as specious as Beall.

Tools for Change in STEM identifies the two biggest things that need fixing to increase the representation of women.

Daylight Savings is a dumb idea, I say. Why do we still have it? One reason is that Big Candy sells more candy at Halloween.

The new head of the University of North Carolina system is bad, bad news for higher education: “For those of us who think that universities exist for academic purposes — to teach academic knowledge and skills, to pass on academic virtues, and to sustain academic research — the stakes could not be higher.”

Empirically Testing a Three-Step Intervention to Increase Faculty Gender Diversity in STEM. If your department is hiring and you don’t have the gender ratio you should have, then this looks like a very useful guide to make the change we need. Seriously. If you’re on a search committee, print this out and give it to everybody else. Why? “Searches in the intervention were 6.3 times more likely to make an offer to a woman candidate, and women who were made an offer were 5.8 times more likely to accept the offer from an intervention search.”

A nice explainer why we need diversity in science published in The Hill. So some congressional staffers are now more enlightened. (By the way, why it is that they are “staffers” and not “staff?”) Also, the ideas in here are good for boilerplate for your broader effects section. But if you’re like 89% of people, then your broader impacts aren’t targeting underrepresented groups.

The so-called Freshman 15 might be because of bad sleep patterns.

Many reviewers reject papers for pseudoreplication, and this occurs more often if they haven’t experienced the issue themselves. The concept of pseudoreplication is being applied too dogmatically and often leads to rejection during review.” Really? I’m not inclined to buy this idea. (First of all, reviewers don’t reject papers, editors do! It might sound like a mere semantic difference but does show a lack of appreciation for how the editorial process works, which is the focus of the article.) How often do papers get seriously dinged because the experimental system isn’t amenable to highly replicated units? In my experience — as reviewer, editor, and author — reviewers are understanding of the notion that some kinds of systems can’t be perfectly replicated, because they are taking place in someone else’s plantations or in streams, or habitat fragments that are scarce or difficult to access. Really, this is keeping good science from getting published? Hmmm.

“’You can’t infer process from pattern’ is just one of those things people like to say because they think it makes them sound rigorous and clever. It’s a slogan. Politicians like to bandy these about, and sometimes, we scientists do too. Real rigour and cleverness don’t lie in slogans; they lie in careful thought that recognizes the complexity of nature.”

Six myths about a teaching persona. This is a really good list if you’re wondering what kind of persona that you should be adopting with your students.

Do you know anybody who complains that the approach to math in common core is dumb? Here’s a straightforward explainer why the “new math” in Common Core is way better, and how Americans have been learning math as kids makes no sense and deprives the chance to develop number sense. (If you’re not familiar with Common Core, it’s a new set of standards for K-12 education in the United States, that emphasizes problem-solving and integrative thinking, and definitely an improvement over what we’ve been doing. It’s not a panacea but it does provide teachers more latitude to teach effectively as these are less prescriptive standards and emphasize critical thinking and problem-solving. You might hear trash talk about Common Core standards, but rarely from those who are in charge of teaching it. Implementation varies, of course.)

George Saunders on his development as a writer. (And if you haven’t read anything else by Saunders, it’s amazing stuff, put it on your list. I’d say start with The Braindead Megaphone. And Saunders’s commencement speech is up there with David Foster Wallace’s commencement speech.)

Monkeys compensate for small gonads by being more loud and annoying. (Here is the press release.)

How Back To The Future‘s vision of the future was off. We don’t have that middle class that Marty and his kids were living in. The neighborhood-of-the-non-horrible-future was filmed pretty close to where I live, and this article in the LA Times really resonated with me.

The New York Times published a hideous op-ed that criticized a strawman version of active learning in higher education. It had a fair amount of the get-off-my-lawn-kids-need-to-sit-down-and-listen BS. She only addressed the educational needs of marginalized students in one line, and then in the subsequent line dismissed those concerns as inconsequential. Josh Eyler was up to the task of debunking the false claims in this op-ed. What to think about whether or not to lecture or do active learning? I think we should listen to The Little Professor on this matter.

Why white parents don’t choose black schools.

On Taphonomy:

Dinosaurs teach kids certain things about the monsters they will encounter: that scary things look scary, that scary things are dead, and also that scary things are exciting and anthropomorphic. Dinosaur fights suggest a singular, definitive battle, like a dragon, something you see coming from a mile away, ready yourself for, slay, and move on from. When, of course, real problems are the opposite: boring, small, creeping, not singular but sprawling. And: extant. A grown-up problem is nothing if not alive.

Why is academic writing hideous? “Academics play an elitist game with their words: They want to exclude interlopers.”

Have a great Halloween weekend, y’all.

Respecting the time and needs of adjuncts

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Almost every university in the US has succumbed to financial pressures and employs a relatively high proportion of adjunct instructors. Typically, adjuncts are highly trained professionals with a graduate degree, but don’t get the compensation or professional courtesy that they deserve.

Universities have given up on the notion that all faculty should have job security. Instead, now institutions are measuring “tenure density” as a measure of how many faculty are fully paid and fully respected. Continue reading

Ant science: Thieving ants know how to be sneaky

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Ectatomma ruidum. Image by Alex Wild

Ectatomma ruidum. Image by Alex Wild

The most recent paper from my lab is a fun one. We show that thieving ants have a suite of sneaky behaviors, to help them avoid being caught in the possession of stolen goods. These differences are dramatic enough to classify thieves as a distinct and new caste of ant.

Continue reading

Recommended reads #62

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Poster session drinking game for the Society for Vertebrate Paleontology meeting.

A former meerkat expert at London Zoo has been ordered to pay compensation to a monkey handler she attacked with a wine glass in a love spat over a llama-keeper.”

Machines get broken. Human social systems don’t “break.” Academics should get back to discussing our systems and conventions in a more sophisticated manner.

The hardest part of academia? Moving.

A Japanese mathematician claims to have solved one of the most important problems in his field. The trouble is, hardly anyone can work out whether he’s right.

Wow, Lou Reed was horrible.

Whereas Tom Petty wasn’t horrible, (and picked up a heroin addiction when he was 50, which he kicked.) This is an interesting interview. Almost as interesting as Chrissie Hynde’s interview on NPR, which needs to be listened to rather than read.

California signed into law a ban on the use of the R-word for school mascots. There were four schools still using it, and they are (sadly) clueless about why it’s racist. It’s stunning how they just don’t get it. Anyway, this article about the how these schools are taking the loss of their mascot is informative and a bit tragic, but worth reading if only because the last two paragraphs are just so painfully ironic, in a “I can’t believe this isn’t The Onion” kind of way.

A protocol for data exploration to avoid common statistical problems‘.

Is Walden just cabin porn?

What it’s like to earn a living as a professional subject in clinical trials. This is not a good thing for medical research.

Did you see that story going around, about how an evil scientist saw a rare bird for the first time and then killed it? It took off without any context, and it was implied that this was a rare or endangered species, which is not the fact at all. It’s locally common, just in a really remote corner of the Pacific, and it just hadn’t made its way into a collection, which is really important. Here is an explanation from the person who did the fieldwork, which is a remarkably even-keeled, genuine, and nonjudgmental response to the trashy story you might have had to see on facebook.

Gotta love having an intellectual President. Barack Obama interviews Marilynne Robinson for the New York Review of Books. Just because he can.

Still anonymous, from the exceptional Women in Astronomy blog.

On serial sexual harassment: The Long Con

(By the way, if you’re inclined to hear more from me and HK Choi about the Geoff Marcy situation and his long history of harassment at UC Berkeley, it’s the bulk of the next Not Just Scientists episode that will that launch on Monday.)

A museum from the hometown of William Carlos Williams hosts a reception for all of the people that he delivered throughout his career as a pediatrician. You know, in his spare time when he wasn’t writing poetry. Love this.

Huh. The director of NSF has a blog that gets updated quite frequently.

It looks like there was at least one major omission in the Nobel Prize for DNA repair.

Speaking of which, The Folly of Big Science Awards.

Here is a story about a scientist serving as an observer on a fishing vessel who disappeared under suspicious circumstances.

These are hands-down the best lab manual/exercises for invertebrate zoology. At least, that I’m aware of.

The need for more professors of color: No matter what an institution does or how committed it is, the goal of developing an inclusive and equitable environment for students requires a diverse faculty.

While we’re on the topic: Being marked for speaking truth to power.

From the files of “No shit, Sherlock”: Publish or perish may discourage innovate research, a study suggests.

Is Snoopy a narcissist that destroyed Peanuts halfway into its 50-year run?

Should we do blind analysis, to reduce bias?

Dan Janzen is interviewed in La Nacion, the paper of record in Costa Rica, about the waning passion for conservation in Costa Rica. These stories you hear about enlightened conservation ethic in Costa Rica? Those might be relictual. (Note, the article is in Spanish.)

How to recommend reviewers when you submit a paper? This is more insightful than you might think, about the set of people you might suggest: “Give a list of people who aren’t the obvious “usual suspects” in the broad field. In terms of seniority, focus on mid-career (e.g. Associate Prof. level in the U.S. rank scale is often ideal); junior faculty or even postdocs can also be great if they’ve done interesting and insightful work in your area. Often younger researchers do the best reviews, and the ideal is someone who’s had enough experience to develop vision and perspective, but who still has the time in their life to commit to doing a thoughtful review. The perfect name is one to which my response will be ‘Ah ha, of course! I hadn’t thought of her, but she’d be great.’  Give me three of those, and I will be grateful and impressed. Never a bad way for the editor to feel when he’s beginning the process of determining your paper’s fate.”

Seeds that act like dung to get moved around by dung beetles.

This is an outrage: when women are hired into biomedical research positions, they get just a small fraction of the startup costs that men get. What the hell.

And probably not a surprise to those in the know: Harvard has trouble keeping women on the faculty: (who they call “female faculty.” Like the Ferengi.  “The report details a trend in the departure of female faculty members before they stand for full-time tenure review. Last academic year, only 66 percent of women up for the final tenure review—which determines whether or not junior faculty members will be promoted to full-time, tenured professors—actually stayed at Harvard through that review, compared to 78 percent of men, a difference the report calls ‘troubling. In interviews with tenure-track women who were leaving Harvard, administrators found a “striking” reason that they left was an uncomfortable culture in their respective departments, according to the report.” (emphasis mine)

If you saw this story, you could totally predict I would be linking to it: Prison inmates beat a Harvard debate team. Yes, in a debate.

I’m not posting those two previous ones in a row to pick on Harvard at all. I just thought I’d put my two Harvard links next to one another. For reals.

The NSF Division of Environmental Biology blog dispels some myths. One biggie, they say, is that the only difference between the PI and the Co-PI, in their eyes, is who does the paperwork. Huh. Do panelists and reviewers know this?

Why schools should exclusively use free software. (This has a little too much ethical absolutism, and clearly doesn’t choose to look through the eyeglasses of others, but anyway, here you go.)

Some sexist tropes in The Martian (book). I heard the book is amazing, and heard the book is horrible. Clearly a bimodal distribution of responses. I haven’t heard anybody claim it’s fine literature, though. A ripping science yarn, sure.

Why ancient Rome matters to the modern world.

Insect taxonomists have some bunched up undergarments over the description of a species without a voucher. This is not unprecedented, but nonetheless isn’t a good precedent to repeat.

Why I avoid the p-word

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I write because I want to change minds. I don’t need everybody to agree with me, but I write because I want people to be aware of the stuff that I’m writing about.

People are often irrational, often to the extent that important advice is ignored. Using facts and ideas to open people up to different ideas is an uphill task. But I’ve heard on occasion that this site has sometimes changed minds — or at least exposed people to new ideas. Stories like that are encouraging, and prevent me from stopping.

If you’re trying to reach people who disagree with you, then minds need to stay open. Bombast, indignation and overgeneralization generate readership but they also tend to close minds.

When dealing ideas that are weighed with cultural baggage, then it’s really easy to do or say something that makes people stop listening.

Which is why I avoid using the p-word. Continue reading

Recommended reads #61

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Do you know who discovered that VW was cheating on its emissions? Researchers at West Virginia University, who were working on a $50K grant. In addition to the previous link from the Atlantic, here’s the shorter NPR story.

This Goes All the Way to the Queen‘: The Puzzle Book that Drove England to Madness

Does your field station have a guide for responding to sexual harassment and sexual violence? Here’s one from Kathleen Treseder that will be in use with UC Irvine facilities. And UC Irvine has an Equity in Fieldwork initiative.

Now we have video footage of the squirrel that officially (?) has the world’s fluffiest tail. And rumor has it that it is a predator of deer. In all seriousness.

Ta-Nehisi Coates was picked for an extraordinarily well-deserved MacArthur Fellowship. Here is a hilarious interview with him about how he is a certified “genius.”

Lower test scores for students who use computers often in school, 31-country study finds.

Gangolf Jobb wrote Treefinder, software that you use to build evolutionary trees using data from genetic sequencing. Americans are forbidden from using his software because of imperalism. And most western and northern European nations are forbidden because of their immigration policies. In addition to the software manual, the Treefinder site has some primo xenophobic ranting that can’t found on any other phylogenetic software website, at least not that I’m aware of. Yikes.

Jerry Coyne, evolutionary biologist, atheist activist, and blogger, officially announced his promotion to Professor Emeritus. He reflects at length on his career, the state of science today, and his plans for retirement. One tidbit in there that raised my eyebrows is that he was able to renew his grant from the NIH for thirty years of consecutive funding. Another other thing that piqued my interest is that over the course of those thirty years of funding, he had four graduate students. His two big pieces of advice for junior scientists? Work hard, and don’t engage in “gratuitous co-authorship” on the papers produced by members of your lab. I guess with his extensive record of mentoring so many students over the length of his career, he’s earned the right to give that advice.

On an entirely unrelated note, check out this very brief youtube that shows the change in the age structure of NIH grantees between 1980 and 2010:

 

Nine Ways to Improve Class Discussions

It sounds insane that the US and China might go to war. But in the history of civiliations, a shift of power as big as this one has almost always been associated with war. Are conditions any different now or are we destined to fall into “Thucydides’s Trap?” This is a really interesting read.

The grass may look greener: a post by David Baltrus about being a microbiologist in a research institution that doesn’t have a microbiology program to house the many microbiologists at the university. He’s dealing with intellectual isolation issues that those of us in teaching-focused institutions deal with, and it has good insights. (My university just hired a microbiologist. So now, we have one microbiologist in the whole university. I bet she can relate to this.) My experience has been that if a colleague is in a different building, or a different floor of the same building, they might as well be across town or on a different continent.

What one college discovered when it stopped accepting SAT/ACT scores

Four behaviors I had to overcome to move forward in my career. Robert Talbert explains that his teaching went through a progression of phases, each improving his teaching. The post in which he explains these professional transitions is pure gold. I think a lot of the ideas in there crystallize the central message about respect for students that underpins the ideas about teaching on this site:

  1. Moving from unprofessionalism to being a professional.
  2. Moving from the reflex of assigning blame to the process of solving problems.
  3. Moving from having it be about me and my personality, to having it be about students’ lives.
  4. Moving from thinking of students as objects to students as human beings.

Math with Bad Drawings: What does probability mean in your profession?

The “doomsday” seed vault in Svalbard has been opened for use, because of the crisis in Syria.

The Power of Grace Jones

Amid budget fight, Illinois State Museum prepares to close. This is tragically shortsighted.

The shockingly racist campus salute for USC’s student body president

Don’t tell me what’s best for my students,” finally a take about trigger warnings with adequate nuance that seems to pretty much reflect what I think, for what it’s worth.

I was chatting with some people the other day who hadn’t heard of the term “microaggressions.” If you have been inclined to dismiss this term, or the ideas associated with it, this explainer might just change your mind, I hope.

“Remembering the Vela Incident” – did you know about the nuclear test in the south Indian ocean, from a joint Israel-South Africa venture — or was it something else? An interesting mystery that persists.

Three universal New Yorker cartoon captions that work with every New Yorker cartoon.

Philip Morris knew that smoking caused cancer and COPD back in the 1950s. And Exxon precisely knew how their product was causing climate change long, long before Al Gore started to write Earth in the Balance and before anybody else was talking about climate change.

If you can handle the p-word, this is a really informative interpretation of the extreme wealth that pervades the administration of elite universities and what that means for us and our students.

Why I don’t recommend the Pomodoro technique” Endorsed.

How to Dress in Academia and Not Feel Like You’re Dead Inside.

How can p = 0.05 lead to wrong conclusions 30% of the time with a 5% Type 1 error rate? – this is a rebuttal to a paper that I linked to in recent months. Good stuff.

This Trump situation is depressing. Or is it? “Donald Trump Is Saving Our Democracy

Choosing the Best Approach for Small Group Work

If I had to identify the best blog about academia, I wouldn’t pause before saying it is Tenure, She Wrote. The recent story about Title IX, which I would classify as a must-read if I thought it’s my business to actually tell you what to read, is just one of the many amazing things that come from the folks who run that shop.

If you’re an ecologist who hasn’t been pointed to the blog of Manu Sanders, I’m rectifying that situation. Here’s a recent post about art history, in a series about the importance of humanities in science.

The Heartbreak of Watching Richard Dawkins Implode

Putting kids into college: Here’s a story about a family that hired a college admissions advisor.

 

Making time for exercise on a regular basis

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There are a couple facts that make regular exercise an obvious choice:

  1. Exercise makes you healthy and happy.
  2. Exercise helps you focus and get more work done, even after you subtract the time spent on exercise.

Those two things are definitely true for me.

Nonetheless, historically I’ve done a crappy job of getting regular exercise. Continue reading

Educating the ignorant masses, Eli Broad style

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The exterior of The Broad.

The exterior of The Broad.

Los Angeles has a brand new huge art museum, The Broad. I had a chance to visit it a week after it opened.

Unlike most contemporary art museums, The Broad is designed to house and display one person’s collection. Eli Broad (rhymes with toad or goad) is a fantastically wealthy person who is a major collector of contemporary art.  After supporting some other museums in town, he decided to go it alone and build his own building for his own stuff. It’s right across the street from Museum of Contemporary Art, right next to the rippled Gehry structure that houses the LA Phil. In LA, at the moment, it’a a big frickin’ deal.

The Broad is, above all else, a jewelry box designed to hold items of great financial value. What else is The Broad? Continue reading

How often should tenure-track faculty be reviewed?

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How often should pre-tenure faculty files have to submit files for review? Too often can be annoying and stressful, too much work for all. If reviews are too infrequent, then pre-tenure faculty might have more anxiety and uncertainty, and final decisions may be inadequately informed.

How often does your university review pre-tenure faculty? How often do you think it should be? Continue reading

Recommended reads #60

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First things first: I’d like to share that I just launched a new podcast series, Not Just Scientists. It’s not associated with this site at all, though we might occasionally discuss a topic I link to here. I’m doing this with HK Choi, a buddy in my department. I’m pretty excited about it. It’s a conversation between HK and myself about things happening in science, and in not-science, and we have plans to interview guests who are doing interesting stuff. New episodes will launch every two weeks – the first one is up. It involves the discovery of Homo naledi, the biology and biogeography of lice, what you say at parties when people ask what you do for a living, and more. It’s not a high-production affair (like, say, Radiolab), but we’re in this for the long haul and we will be getting even better as we continue. Feel free to join us at the start, and if you like it, please spread word.

Bringing back a forest. How we are bringing the American Chestnut back after Chestnut Blight did them in. This is beautifully written and goes into great detail. Here’s hoping that we’ll see recoveries of the American Elm and the American Ash. Or maybe we should stop giving trees the common name “American [tree].” and that won’t tempt invasive pathogens into taking them away from us.

Are College Lectures Unfair?

Teaching is not exactly brain surgery, is it?

A professor at Memorial University of Newfoundland is refusing to wear a transmitter to help one of her hearing-impaired students. Her reason? Religion. She apparently made a deal with the university twenty years earlier so that she could be exempted from using these devices.

Just a heads up, if you report academic misconduct of your collaborators on federally funded research, you may not qualify for federal protection as a whistleblower, and retaliation at work can come swift and hard without recompense.

Fathers who serve as the “primary parent.”

The five second rule is bunk. In microbiological terms, it’s much better to eat food off of a carpet than a wood floor or tile.

“Audubon painted a bunch of birds that no one has seen since. We explore the most likely options behind the mystery birds.”

The HMS Erebus and a sister ship left England in 1845 to find the Northwest Passage. They were never seen again — until a team of Canadian searchers discovered the wreckage in the Arctic last year. What followed was a dispute over the facts of, and credit for, the historic find.”

Did I mention that Not Just Scientists is free on the iTunes store?

Is teaching an art or science? For that matter, what about the practice of medicine nowadays?

HK Choi, my podcast pal, writes in his blog about the History of Molecular Biology:

Few would argue the position that The Double Helix holds in the history of [molecular biology]. Its influence cannot be overstated. Every biologist, chemist and physicist I have ever met – and many others besides – has read the it (it doesn’t hurt that it is a short, breezy read). Entire books have been written to defend those it besmirches. Scientific lives and careers have been colored by its often unfair and grotesque characterizations. The history of molecular biology – or should I say more accurately, the manner in which molecular biologists view the history of their own field, has been framed by its narrative – the thesis that the elucidation of the physical structure of DNA formed the culminating, climactic moment of a nascent science – Griffith, Avery, Chargaff mere preamble; Hershey and Chase, Meselson and Stahl the supporting evidence; recombinant DNA, the Human Genome Project, biomedicine in general and the history of humankind the consequence. Watson’s book is testament to the power of narrative. The relentlessness of story gobbles everything in its path; and protestations and contrary evidence and mitigating circumstances become mere handwaving, as ineffectual as it is pathetic. Some have argued that the book is as great an accomplishment as the discovery itself.

Just in case you want to learn about the Campaign Against Sex Robots. Really.

This is just brilliance from McSweeney’s: An Interactive Guide to Ambiguous Grammar.

Did you hear, I started a podcast! A PODCAST! Not Just Scientists.

A drum that’s worth beating continuously: There is no excuse for how universities treat adjuncts.

From Talking Heads to Talking Students: Driving the paradigm shift in science education. If you can overlook the use of the phrase “paradigm shift” then this can be useful.

How to be a URM grad student. It’s written for physics/astro, but works far more broadly, and goes far beyond the boilerplate stuff that you tend to see on the topic. It’s written by
Chanda Prescod-Weinstein, who is also worth a follow on twitter.

Rethinking the University Classroom: Ban the podium-style lecture, not the laptop.

My long journey to student-centered learning.

Time versus debt: why these students chose community college.

From R1 to CC: 3 Things I Wish I Had Known About Community College Careers

Exploring the advantages of rubrics. Why is it that some people just reflexively hear ‘rubric’ and think that they’re bad or dumb or not constructive or a waste of time? All of the arguments that I hear against them are never student-centered. Okay, fine, let’s say a rubric doesn’t help you grade better or more fairly. (I find that hard to be believe, and the research says it’s not true, but okay, fine, I’l accede that point.) What a rubric does more than anything else is help students write better. It gives students a very clear indication of the things that matter to you. Do you want your students to write more clearly, makes sure that they use topic sentences, don’t have typos, follow length guidelines, make clear logical arguments, have enough background research, cite material appropriately? Do you want students to think originally? Is there something else you want from your students? If so, then put it in the rubric and then they’ll do it because their grade depends on it. (For context, what I wrote about rubrics earlier.)

Let’s be more frank with colleagues and students: Being head of undergraduate studies was an eye-opener for Stephen Curry”

Here’s a non-paywalled article from the Chronicle: When it comes to startup for biomedical researchers, women get totally screwed over. If you ever wondered how negotiations can be gendered, here you go. Wow.

The problem in American education is not dumb teachers. The problem is dumb teacher training.”

This is an entertaining light read, “How I used science to fight back and [defeat] my insurance company.”

On the moral qualities of teaching and pedagogical content knowledge. What’s the difference between the knowledge in your discipline, and “pedagogical content knowledge”? This is one piece of of edu-jargon that in my opinion is connected to a useful idea, and this is a good place to start. Pedagogical content knowledge is, in short and probably badly put, the information about teaching about a  topic. Someone can be brilliant in (say) immunology, and be highly versed in teaching, but still know bupkis about how to teach immunology.

A teacher gets inside the mind of a serial cheater—and is dismayed by what she learns.” I’ve said this before, I’ll keep saying it, and people keep denying it even thought the science is very clear. Cheating is rampant, even in our own classes. Cheating is the norm. That’s a fact we have to own.

From the desk of an intolerant nincompoop: “All scientists should be militant atheists.” Actually, despite the odious title, the contents of the piece aren’t so bad, basically arguing that scientists need to argue for the use of evidence with respect to everything. I guess this guy can’t accept the fact that people aren’t inherently rational.

Here’s the thing. Almost all the time, the answer is in the box. That’s why the box is there: we found the good ideas, and put the box around them

Economic diversity is within the power of any top university. The question is whether the university’s leaders decide it’s a priority.” This is in the context of what reads like PR piece for the University of California system in the New York Times. These campuses half the fraction of first-generation college students at the California State University, and they cost more than twice as much. But they rate higher in ‘college access’ rankings because their graduation rates are a lot higher. Most of the students in the CSUs don’t even have UCs on their radar because they didn’t have access to a high school that would prepare them to get in, or they can’t come close to affording it – the CSU is still too expensive for most of our students. The UCs definitely are an engine lifting up incomes, but it’s not so much serving the people in poverty as the people in families struggling above the edge of poverty, in a state that is expensive to live in. For context, I almost went to a UC myself 26 years ago, but it was too expensive for my (lower middle class) family and the need-based financial aid from a private small liberal arts college was cheaper and required us to borrow less money. Let’s be clear — the UCs are not for California’s low income students — but they still do play a role in class mobility.

More numbers about which colleges enroll first-generation students. Who looks good in this? Me! Well, my university, which is second-highest among public universities in the nation. The top five in that category are all Cal State universities.

Is it time to tax the endowments of extraordinarily rich universities? This article starts with the quip that Harvard is a Hedge Fund with a university as a tax shelter. By the time you’re done reading this, you might well agree.

The Atlantic has always been a solid outfit, I mean always because they’ve been around for so long. And now they’re doing science right. Read this and tell me you’re not inspired to love the vision.

Creativity, play, and science.

…and even more from Stephen Heard, about why he’d rather teach non-majors.

The lab decalogue. (If you’re unfamiliar with western religion, that’s the ten commandments. But there actually are eleven here.)

Walter White apparently made the ugly Pontiac Aztek cool again. I mean for the first time.

How do you handle sharing and educating about environmental change when conditions are often so devastating?

This is hilarious. An Australian rugby player covers an American football game.

This is the most epic humblebrag about being 4.0 student.

The cost of private colleges isn’t skyrocketing. It’s just that the sticker price is getting inflated, and then you get a discount from the dealer. I suppose this is one way that income inequality is playing out in a less-than-horrible way, that obscenely wealthy people are subsidizing people who need discounts. But come talk to me in five years as my kid is preparing to go to college. (I can’t even begin to get my head around that idea about that idea now.)

Elizabeth Kolbert explains what it will look like if we burn all of the world’s fossil fuels.

Does the Anthropocene have to be a fatal vision?

We aim to counterbalance current dystopic visions of the future that may be inhibiting our ability to move towards a positive future for the Earth and humanity.  We will do this by soliciting, exploring, and developing a suite of alternative, plausible “Good Anthropocenes” – positive visions of futures that are socially and ecologically desirable, just, and sustainable.  We expect that any “Good Anthropocene” that emerges will be radically different from the world as people know it today. Yet we also know that these futures will be composed of many elements already in existence, which we call “seeds’, which could combine in unique and surprising ways to create an almost unimaginable future.

More than two centuries ago, Humboldt surveyed the vegetation on Chimborazo, a huge volcano is what is now called Ecuador. These folks went back and redid Humboldt’s survey and wrote about it in PNAS. And surprise, things are shifting upslope. It’s a very cool study.

Speaking of Humboldt, I just picked up a copy of Andrea Wulf’s brand new book, “The Invention of Nature: Alexander von Humboldt’s New World.” If you’re not familiar with Humboldt, he was a naturalist who travelled the world, back when it wasn’t so easy to do that kind of thing, and his work is at the foundation of so much that happened since his time. Foundational to what people often think of as the foundations for the study of nature. I can’t quite recommend the book yet, as I haven’t read it, but I’m excited to get to it. But I’m mentioning it now because I have a feeling I won’t get to it until the holidays roll around.

There are fewer black men heading to med school in the US now than there were 40 years ago. Not just a smaller percentage, a smaller absolute number.

Noam Ross just successfully defended his PhD thesis at UC Davis. And his exit talk had a gorgeous flyer:

http://twitter.com/noamross/status/641655871907368960

Donald Trump is the new face of white supremacy,” says hate crime expert. “Before you think this article is ‘just one liberal’s opinion,’ let me briefly say I have dedicated my life to studying racism.” It’s a more worthwhile read than you normally would think. I almost didn’t click through when I saw this and I’m glad I did. It’s really educational. Considering I’m white and all, I realize I didn’t know much about how the white supremacy movement works in the US.

There was an interesting article in the Chronicle of Higher Education about how the University of Georgia is throwing down millions of dollars to hire adjuncts in order to dramatically lower class sizes. But I’m not linking to it because it has a paywall. Yeah, I’ll link to some paywalled things, but not from the Chronicle. So there.

“It’s often said, for example, that contingent faculty are less valued because they are teachers rather than researchers and the academy privileges research. This is not true. The academy values neither teaching nor research when it is produced by the lower caste, and both (though to varying degrees) when it is produced by the higher caste. The teaching of all contingent faculty is often judged to be inferior simply because contingent faculty are contingent.”

The Hipster Bar Menu Generator. Actually it says Brooklyn bar but you get the idea.

Here’s an interesting “citizen science” project using people and their cell phones to measure air pollution. By the way, I put “citizen science” in quotes because I just think it’s not a good phrase. First, whether or not you’re a citizen shouldn’t be a barrier to joining this kind of project, if you have a green card or are on a visa or undocumented, you’re still wanted. In communities where “citizen science” projects are most needed is where this term is most likely to be marginalizing. What to use instead? I have no idea. The field of “informal education” has a similar problem. People just don’t know what it is. But what’s a better phrase to use? “Out of school time education?” Ugh, that’s worse.

I think the Smart Girls movement/organization by Amy Poehler is spectacular, especially celebrating that girls can be awesome by being themselves. But then there’s this video series that they’re sponsoring which is just, in one word, wrong. Katie McKissick, the artist behind Beatrice the Biologist, does a great job with the delicate matter of expressing reservations about this series. It’s interesting that some legitimate and otherwise not-subject-to-poor-judgement science educators have been involved. But I suppose work like this pays the bills. I’m not in a position in which I’ve been offered money to appear in a video series that glorifies drinking to preteen girls in the context of a science infotainment video, so I can’t say I’d do differently.

This visualization is worth five and half minutes:

If 12-year-olds Anissa Weier and Morgan Geyser knew that the internet character they worshipped was a fantasy, why did they want to kill their friend for him? Save this for the weekend, brew a hot beverage and curl up with this one.

How did Ashley Madison hide the fact that they were scamming would-be-cheating men with female robots? Actually, they were horrible at hiding it. And some guys sought legal remedies. But of course most would just pay and slink away.

Have a great weekend.

And, oh, if I haven’t mentioned it yet, I started a podcast.

Recommended reads #59

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The time I became a father in the same week my tenure portfolio was due, from Liberal Arts Ecologists.

You’re an insect curator. Cool! So what is it you do?!

Saving species experts from extinction

How should a professor be? 22 suggestions, including many great ones.

The NSF Division of Environmental Biology is typically in top blogging form. Lately, they’ve told us how how to write and what they want to see in annual and final reports. Since the reporting system recently shifted over from Fastlane to Research.gov, this is a good time to consider the what, how and why about what goes in there. (And I’ll be making some offering to the Lab Goddess in the hopes that this will still be a problem of mine a few years from now.)

Weeks ago, NSF announced that they have scaled back the scope of NEON, the ambitious National Ecological Observatory Network. They didn’t cut the funding allocation to NEON, but just discovered that there were bigger financial and logistical constraints than initially anticipated. What to think of this? Well, in short, I think budgets gonna budget. A more informative view about changes in NEON comes from 16 presidents of the Ecological Society of America, which was published yesterday. 

Our obsession with metrics is corrupting science

Research metrics have made rivalry part of higher education’s DNA

I Am Biased and So Are You: thoughts on funding and influence in science

Sexism in science leads to willful blindness

Oh my gosh the first paragraph of this review of Franzen’s latest novel pins him down in a way I have primordially conceived but couldn’t really express:

Probably no one alive is a better novelist than Jonathan Franzen, and this is frustrating because his novels are awful, excellent but awful, books you read quickly and remember ponderously, books of exhaustive craft and yet a weird, spiraling cluelessness about the data they exhaustively collate. They analyze the wave frequency but don’t hear the sound. They are full of people who talk and act exactly as you imagine such people would talk and act in real life…

(And for the record, as a human being, Franzen is a verified putz.)

Here is an incredibly helpful post in Dynamic Ecology for new parents and parents-to be, about pumping at work. (Dads, this is for you too, as presumably you’re on bottle cleaning and management, and probably involved with Picov Andropov.)

If you’ve ever had the misfortune of going to or from Los Angeles through LAX, you probably noticed this historic airport was designed around the car, but not for contemporary quantities of cars. The design is particularly non-amenable to modernization. But here’s a big design that can help make LAX work more like a regular international airport.

Oliver Sacks has died. The New York Times obituary is a good one. One thing I learned, that surprised me a bit, is that he was a super-duper workaholic. Spent all his time thinking about work.

If you have any black students, or any students who are women, or any learning disabled students. Or anybody who isn’t a white male. Please do them, and yourself, a favor and read this explainer of stereotype threat if you don’t think you’re an expert on stereotype threat. It’s amazing how massively student performance can be affected merely by how assessments are perceived.

‘Love Becomes a Funeral Pyre’ review: The rise and fall of the Doors. Huh. I had no idea Jim Morrison was just a horrible person.

Using Active Learning to Teach Concepts and Methods in Quantitative Biology: “We describe some of the recent initiatives to develop hands-on activities in quantitative biology at both the graduate and the undergraduate levels. Throughout the article we provide resources for educators who wish to integrate active learning and technology into their classrooms.”

Teaching a class all about On the origin of species

The Case for Teaching Ignorance

10 Things This Instructor Loves

Taking My Parents to School — this is a wonderful read about the experience of first generation college students, and food for thought because odds are you’re teaching at least a few.

Is the tech sector in a bubble again? Hell yes, we are in a bubble.

On turning down the startup job:

The startup world, or at least the ones making the majority of the noise, have their heads up their own ass and don’t realize it stinks. They’re solving problems for the top 5% of the population. How can I get poor people to do my chores? How can I get people to drive me around without having to pay them health insurance? How can a drone deliver my toilet paper within 15 minutes while the person who fulfilled my order sits at her desk crying because she’s working a 15-hour day and can’t take time off to get that lump in her chest looked at. This is known as the service economy. Where entitled white boys figure out how to replicate their private school dorm experience for life.

“I Had a Baby and Cancer When I Worked at Amazon

Next time someone asks me what it’s like being an Associate Editor, I’ll point to this post, which has the lowdown.

An organic chemist I know tells her doctors that she is a professor of Southern literature whenever she is in the hospital.” Herein lies some interesting thoughts about the education of doctors.

This is not a surprise at all, the but data themselves are fascinating: That Ashley Madison site had no real women using the site. And they invented a bunch of women for men who paid more than a little money to fantasize that they could actually use this website to cheat on their spouses.

How understanding the prisoner’s dilemma can help bridge liberal and conservative differences. You know about that class that had an extra credit problem, in which students had to choose to Hawk or Dove for extra credit points?  This is an interesting rationale.

Why is the US number one in mass shootings? The American Dream.

Japan is serious about getting rid of the humanities and social sciences.

How Common Core Can Help in the Battle of Skills vs. Knowledge

This 50-Cent Paper Microscope Could ‘Democratize Science’ – if you ignore the hyperbole, this is a mighty fascinating and inexpensive tool.

Here’s a consequential convergence of gay rights, sports, and intercultural understanding (or the lack thereof): It was only in 2013 that the US saw the first openly gay athlete playing in a major league team sport. The pioneer was Robbie Rogers, who starts at left back for the LA Galaxy (whose stadium happens to be on my university campus, which has its perks). That was a big signing for the team, but a more recent big signing has inadvertently introduced an ethnically charged anti-gay element into the fan base of the Galaxy. In perhaps the biggest leap ever in Major League Soccer, the Galaxy just brought on board the Mexican international star Giovani Dos Santos. Who seems to be a perfectly nice guy. This is a huge coup for the league, and also for the Galaxy which has caught the eye of many Mexican soccer fans in LA who up until now looked to the south and to Europe to follow the game. And they’re coming to the stadium to cheer on Gio and the Galaxy. But, there’s this thing that Mexican fans do when they’re at a soccer game. When the opposing keeper takes a goal kick, the crowd shouts “puto.” Which, no matter how you slice it, is an anti-gay slur. (I haven’t been to a game since Gio was signed, and now, well, I’m not so thrilled about the idea.) I’m sure a lot of the people who do this, don’t think consider it to be the horrible anti-gay insult that it is. The Galaxy doesn’t want to alienate the Mexican fans they just paid several million dollars to attract, but they also don’t want the league to take a step back after having made some substantial progress towards equity and inclusion — the work environment for gay and ethnic minority athletes in the US is much, much better than in Europe. It’s critical for the Galaxy and the league to shut the lid on this practice of hurling an anti-gay slur at the opposing team. How do you get fans to stop doing something they’ve been doing for so long, that some think is a part of their culture? In Europe, teams and their supporters have been punished for racial abuse by being forced to play future home games to an empty stadium. I hope Major League Soccer heads in this direction if a kinder, gentler educational approach doesn’t work.

Do you list job talks on your CV as invited talks? I used to, then pulled them, but it seems at least in biology that people tend to? Here’s the start of a discussion on the topic, click through to see the extended and interesting conversation that follows:

Last, a set of spectacular artwork featuring butterflies and moths gets published, after being hidden away more than a century.

Have a nice weekend, which is a 3-day weekend in the US. (So I’m not planning on posting on Monday.)

Some posts you might have missed over the summer

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Summer is over, not that we’d know it from the weather in Southern California. Anyway, the full complement of students are back. In the event your eyes were not glued to Small Pond over the summer, in no particular order, here are my favorite posts that you might have missed:

People are irrational. I come to terms with the fact that people are, by default, not rational. I tell a funny story about a guy who gets ants confused with snakes and doesn’t want to be wrong about it.

Why aren’t undergrads more like 8 year olds? Catherine Scott reports on her time from a science summer camp.

Universities that want research but don’t want researchers. It’s frustrating when some universities want to up their research game, and might invest into having more research, but don’t invest in the people who actually are doing the research. You can’t have it both ways: if you want research on campus, that means you need to support the people that make it happen.

I explain why I chose to not put a pasta strainer on my head for my driver’s license photo. As atheism is slowly becoming less of a weird thing in the United States, the visibility of punchable atheists is growing, and this isn’t good for science education.

Some email from ResearchGate slipped through my spambox and I discover that this is actually an important way of getting papers to people who otherwise wouldn’t have access. Why I’m not ignoring ResearchGate anymore.

This is what I had to say about the Tim Hunt brouhaha. (In short, he doesn’t seem to be a monster, and he does seem to have been an advocate for specific women in science who have been in his lab. But he failed to capitalize on the events to advocate for women in science and ultimately it does seem that he thinks women in the lab cause problems for the men, but doesn’t seem as concerned about how men in the lab cause problems for women, which is a much bigger problem.)

 

16 things to consider as you assemble your syllabus

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  1. Do you tell students how long it will take for you to respond to emails?
  2. Do you have clear-cut consequences for academic misconduct such as cheating and plagiarism? Do you know exactly what you plan to do when you find misconduct? (Here is how I deal with it.)
  3. Is your course designed to minimize the probability of cheating?
  4. Are you offering extra credit? If you are, do all students have equal opportunity to get the extra points, considering that different students have different schedules outside of class time? (Maybe extra credit isn’t a good idea.)
  5. Have you ever changed the date of an exam from the one on the syllabus? Be sure to put in print whether or not an exam date is a firm promise or just a guesstimate; students schedule around these dates.
  6. Is your grading scheme designed so that it is unambiguous, fair, and minimizes student stress (and in general make your life easier) ?
  7. Do you have a very clear-cut policy on laptops and phones? Many people have phone addiction issues and the learning environment is ruined if you don’t deal with it respectfully.
  8. Are you okay with students using earlier editions of the textbook, and is this on the syllabus? Students often ask or wonder because current editions are so expensive and typically are very similar to previous editions.
  9. If a student misses a class that has an assignment turned in or a quiz or exam, does the student know exactly what will happen? Is it possible to design your grading scheme so that accidentally missing a class will not be a personal disaster for the students? Could you design an assignment policy so that nobody will feel compelled to invent a dead grandparent?
  10. Do you include participation points? If so, are these points administered in an unbiased and transparent way so that the students will be able know their exact score at the end of the semester without having to guess? If not, your participation policy is too subjective and unfair.
  11. When students turn in written assignments, will they know the specific criteria upon which these will be evaluated? If you have expectations for writing, could you put the criteria for the rubric in your syllabus. Grading writing without a rubric is unfair to students as they won’t know what you are expecting in the written assignment before doing the work.
  12. You’re going to get grade disputes, even if you say that you do not entertain grade appeals. Do you have a clear policy about grade appeals on your syllabus? Do your policies and practices deter unreasonable appeals?
  13. Is it possible to assign grades to students not based on scores that they earn on assignments, but instead on what competencies they are able to show by the end of the semester?
  14. Some students really love getting their grades through the course management system (Blackboard/WebCT/Moodle/whatever). Do you specify in your syllabus how you use the online course system?
  15. Do any disabled students — including those with a learning disability — know that you’re prepared to provide accommodations for them? Some students can be anxious that faculty might not be receptive and going beyond institutionally required boilerplate can be helpful.
  16. Is there anything in your syllabus that would look bad on the internet? It’s now a very small world.

 

 

*Note: now that buzzfeed is starting to gain the appearance of something like journalism once in a while, I’ve decided that the title of this piece of writing is journalistic enough for today.

Recommended reads #58

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So many great things came my way this week, I’ve had to unload them a week early. Enjoy!

A survival handbook for teaching large classes. This is good stuff.

Mad Max: Field Assistant

As a professor, here are five really simple things you can to do help single parents in your classes. Keep in mind you might have a single parent among your students but not be aware of it!

Maybe there is no such thing as renaissance person. Maybe these people are merely expert in an unrecognized speciality.

Simon Garnier explains how the big four in football made sports predictable. (For Americans and Aussies, he’s talking about soccer.) If you watch the EPL on occasion and enjoy statistics, this is a wonderful read.

Some months ago, a video about predatory ants carrying millipedes with daisy chains went viral. This inspired an investigation that has now gone through peer review, and the natural history story itself is mighty cool, and well worth watching and reading.

Five big ideas that don’t work in education. This is not gobbeldygook.

Speaking of certain kinds of ideas in education, Joan Strassmann is teaching statistics differently. In her class, understanding probability, distributions, and statistical concepts is getting passed over, so that students can jump right into knowing how to do analyses.

Oliver Sacks writes about the Day of Rest, as he sees his life coming to its last chapter.

The general secretary of the international Astronomical Union, and amateur butthead, chose to praise women by explaining that they have a special gift in being more caring and more dedicated educators.

That Netflix parental leave policy just got even worse. Not all Netflix workers will get unlimited parental leave.

Here’s your feel-good light happy human-interest story if you need one. A barber that gives kids free haircuts if the kids read to him.

Matt Might — who has a penchant for writing the best explainers ever — just wrote an inspiring “How to get tenure” piece. It’s most definitely worth reading (as are all of his articles on his site). He explains how he handled some tremendous challenges and stresses, and emerged all the better by focusing not on tenure, but instead on the transcendent things that really matter. (In that message, it bears resemblance to the story from a Harvard professor about how she got tenure by not worrying about it.)  I am reluctant about recommending this as a piece of how-to-get-tenure advice because on that count, it’s an a posteriori explanation. If you’re trying to decide about what really matters in life, then in my opinion Dr. Might is spot on. If you’re trying to decide how to handle your life balance as a pre-tenure faculty member, then this could be good advice. But it wouldn’t be good advice about how to get tenure, per se. If you can’t be happy and well-adjusted in the six years before tenure, then you probably can’t do that afterwards either. Dr. Might didn’t get tenure because he didn’t worry about it, he got tenure because he performed exceptionally. That exceptional performance happened either because, or in spite of, his insistence on the right priorities. Choosing family as a top priority is necessary to be happy and healthy and well-adjusted, but it’s not a ‘how-to’ for tenure. I don’t think that Might is suggesting that his recipe for tenure is one for us to follow in order to get tenure. I think his message is that worrying about bad consequences can prevent us from focusing on doing what is most necessary and most constructive. He’s saying you can get tenure without driving yourself insane by following academic norms, and if you reject those norms you can still get tenure. On the other hand, rejecting those norms doesn’t necessarily get you tenure.

Since I mentioned that Harvard professor ‘treat your job like a postdoc’ advice piece from two years ago that everybody but me loved, I might as well re-share my misgivings that I wrote back when it came out.

It didn’t make the rounds as much, but just as enjoyable as Might’s “How I got tenure story” is this one from Holly Dunsworth, which might have more directly practical utility for those of you on the tenure track.

What’s in John’s Freezer? A visit to the bird collection in the LA Natural History Museum.

Since I know a variety of people at University of Illinois Urbana-Champaign, I’ve been hearing about the continued horribleness of their now-former chancellor, Phyllis Wise, who just stepped down (or wasn’t allowed to so she could get fired) because of a scandal emerging from the Salaita affair. That’s was the newly-hired professor who was fired before getting to campus because he said things on twitter about Isreal and Palestine that the Chancellor didn’t like. Anyway, Wise made a point of deliberately conducting university business on her private email because she knew what she was doing was wrong. Here’s a recent take on it, if you want the salacious details.

Fivethirtyeight (that’s Nate Silver’s shop, better known as the presidential election stats dude) has an explainer about p-hacking. It shows how you can come to essentially opposite conclusions using the same dataset if you look hard enough, and explains how people often come to erroneous conclusions because of the way they handle data and they way they think about their experiments. I’m planning on including it in my biostats course this semester.

The AAAS Vision and Change report for undergraduate biology education is out from a conference they held last year. I haven’t read it, it looks like a tome with more self-congratulatory content than constructive examples, but that’s just what I saw from a quick browse, so go ahead and make up your own mind.

This year’s Burning Man has a huge number of bugs. (Mirids, I hear.) And people are freaking out, but really there’s no reason to freak out.

You probably heard how Ashley Madison got hacked. Ashley Madison is a site that married people pay a not-small amount of money to, to find other married people so they can have sex with one another. Now a lot of people have access to all of the email addresses (and more) on their website. This will result in some interesting consequences, with victims well beyond the people whose names appear in the database. Here’s a rundown on what the consequences of this data breach will mean.

Biodiversity conservation: the key is to not eat meat. Just putting it out there. It’s hard to argue with the numbers.

Mike the Mad Biologists dons a tinfoil hat but, well, data are data. It is hard to argue with the numbers, and I didn’t scrutinize it myself but I am never willing to underestimate the depth of nefariousness in electoral politics in the US.

Here is a love letter to PLOS One – an overly optimistic summary of the perverse incentives in the academic publishing environment in science.

While we’re on perverse incentives, this piece in PNAS hits home:

When universities publically brag that we are “Xth in federal research spending,” it is akin to an airline proclaiming, “we use more gasoline than any other airline!” or “we spend more per year transporting our passengers!” Consider the appearance and potential consequences if other segments of the national budget advertised in the same way: “The Army outspent the Navy and National Guard combined in 2015!” These proclamations offer nothing about what the public received for its money. Although winning grants is an exciting and necessary benchmark for researchers, the public’s interest is the degree to which we advance science with this massive investment.

Writing a doctoral dissertation improvement grant for NSF? Here are some very useful pieces of information and tips, including actual reviews of successful and unfunded proposals.

This essay about how British universities pick students is a great companion to the thing that I wrote earlier about NSF graduate fellowships being a part of the inequity problem in science.

Why botany matters in college. When I have taught an intro course on the ‘evolution and diversity of life,’ I spent more time on the evolution of plants than the evolution of animals, despite being an animal person (and also, an animal myself). So much of what happens in this world is tied to understanding precisely how plants reproduce, and how it came to be that they capture oxygen from the air and convert it into tissue, and how the changes in the environment have driven the changes in the biology of plants. So many biologists really don’t get how the alternation of generations in plants happens, and what the various parts of plants are. Understanding this isn’t just knowing stuff about organisms, it’s about understanding how our soil and air is the way it is. How this Earth breathes.

About writing clearly in academia: “I start the class with an exercise. I take a random page from a prestigious scholarly journal and make them compute the average number of words in each topic sentence. Then I take a page from whatever Jill Lepore New Yorker article happens to be my favorite and have them do the same. The last time I did this, the average for the “prestigious” journal was 46 words (versus 15 for The New Yorker), a number so outrageous that, whatever goals the author had in mind, communication wasn’t one of them.”

Last, I wanted to provide a very short report after finishing Ta-Nehisi Coates’s Between the World and Me. It was a short read, but I still learned a lot from it. (I wrote earlier that it was “revelatory.” Then I read the quote on the back from Toni Morrison and found that she convergently used the term “revelatory.” So I’m a little proud of myself that I have at least I have that much in common with her.) There are two specific thoughts I want to share about this book. First, if you’re trying to get your mind around what it is to be a black man in the United States — or what it is like to raise a black son in these United States — then this book communicates that experience. Second, one thing I didn’t expect to find in this book, but was a major piece, was the transformative power of higher education. Coates’s life, and his view on the world, was changed by college. He is very frank and transparent about his own evolution. It’s amazing to see how professors and fellow students can change one another’s lives because of what a university is designed to be. I don’t think that is the point of his book, but as a person who works with college students all the time, it’s great to reflect on his story from that angle.

Okay, I said that was the last thing but it wasn’t. More on Coates: Here’s a great interview between him and Roxane Gay. She asked him about what it means to be an ally (as the term itself and how it is used can be not so helpful, as Alex Bond explains), and he summed up clearly why he’s not so jazzed about the ‘ally’ thing in a way that really put logical clarity to vague notions that I’ve been feeling. By saying that you’re an ally, that’s tacitly saying that it’s not your problem:

RG: How can allies best serve as allies? What is an ally? Are they needed?

TC: I don’t know. I think it’s probably terribly important to listen. It’s terribly important to try to become more knowledgeable. It’s important to not expect that acquiring of that knowledge — in this case of the force of racism in American history — to be a pleasant experience or to proceed along just lines. They certainly don’t proceed that way for black people. It’s going to be painful. Finally I think one has to even abandon the phrase “ally” and understand that you are not helping someone in a particular struggle; the fight is yours.

Have a great weekend.

Self-centered people who become famous scientists

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I have a distinct recollection from my sophomore year in college. I was sitting in a hammock in my dorm room, reading The Double Helix, James Watson’s autobiographical account of how he sorted out the structure of DNA.

(And yes, apparently, I used to be that kind of dude who would go to the trouble of putting a hammock in his dorm room. Hey, people evolve.)

The Double Helix was recommended to me because it was a first-hand account thriller about a major discovery that revolutionized how we understand evolution and life in general. That part is true.

But that’s not what I was thinking when I was reading this book. My main thought was, “Wow, this guy is an asshole.” Continue reading

Recommended reads #57

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If this piece of writing doesn’t move you, then you must be a very very heavy object: Oliver Sacks, the periodic table, and mortality.

Museum dioramas are inspirational, if not educational. And “endangered as the animals they contain.”

Beatrix Potter was a mycologist.

You really can be an academic parent and “have it all,” so long as that notion of all is realistic. This is a moving and inspirational post from Tenure, She Wrote.

And for men to have it all, let’s realize that all includes being a responsible parent? Dads need to bring more of home to work.

Isn’t it amazing that Netflix is giving its employees unlimited parental leave? Well, no. That “unlimited” leave reflects a unhealthy work-obsessed environment that is not good for families. It would be truly healthy if they actually gave employees a year or six months or some specific time, rather than “as much as you think you need” which is not so good. Here’s an insightful take from the inside.

And what’s the more hideous thing about the Netflix policy? Only their fancy-dandy white collar workers get parental leave. What about the regular working stiffs in the warehouses? Fuck them, said Netflix.

What really is a food web, anyway? You talk to different people and they have fundamentally different notions about what one is. (And you talk to K-12 teachers, who often have food webs featured heavily in the curriculum, you get something even different!) Here’s a review about the evolution of the idea of food web in ecology.

The Ecological Society of America announced that it is moving its publications over to the mega-publisher Wiley. This doesn’t seem to sit well with some advocates of “open science” – this post by Russ Mounce seems to provide a full summary of the misgivings.

I don’t have those misgivings. I think the shift to Wiley will strengthen society finances, and keep things sustainable as the publishing industry evolves. I agree that it would be a very good thing for all scientific papers to be instantly available to everybody as soon as they were published, and that it is a bad thing that anybody hits a paywall whenever they want to access a paper. Ecology and its sibling journals (aside from Ecosphere) have always had a paywall, of course, and this paywall has actually been growing in size as subscriptions to the journal have been sliding. [Correction – all ESA journals have been, and remain, “green open access,” meaning that you can’t get them for free from the journal but authors can self-archive them. Which means you can get them for free from the author or from a site like google scholar which will find self-archived articles. This is ESA’s current deal with Wiley. So really, nothing has changed.] This switch to Wiley isn’t removing that paywall, but will allow libraries that have agreed to the evil Wiley bundle to be able to include ESA journals. So it’s anticipated that more people will be able to get Ecology than if the switch did not happen.  So why didn’t ESA just go open access instead of shift over to Wiley? That’s a remarkably naive question that doesn’t take into account the financial aspects of publishing and marketing a journal, and the razor-thin financial margins on which academic societies usually operate. I don’t think anybody can predict what the publishing landscape will look like ten years from now, and thought the big publishers like Wiley, Springer and Elsevier are going through what the music industry went through ten years ago, where things will evolve is hard to see. But going open-access would greatly increase author costs, and considering how many students and postdocs publish in ESA journals, it’s not financially reasonable to ask them to assume those publication costs (which frankly are more than the price tag associated with PeerJ). As things sort themselves out, I think ESA is doing well and ride the financial wave of the big publishers for a while, who actually don’t make a profit off of society journals anyway. If there is any real crime here, it’s not failing to go open access, which currently is not financially viable. It’s using the name of ESA to sustain the legitimacy of an endangered corporate financial predator.

Yes! Putting the Ph back in PhD

Here is an interesting short explainer about how the contemporary way we eat meat was driven by the US military.

A recently-finished undergrad has tips for new ones.

I just finished Steve Martin’s Born Standing Up. (It’s funny, I was just about to buy it at the Festival of Books, but on an uncommon whim I decided against it. Then after moving away from the booth, saw it was in the stack of books my spouse bought. So it was meant to be.) Martin wrote a memoir about how he became famous as a stand-up comic, in an era when comedy clubs didn’t really exist. His insights about how he built his career, and how he took more than a decade to hone his craft, can be really informative to scientists. The way that you become popular as a comic isn’t that different than how you become popular as a scientist. Seven years ago, Mike Kaspari read the book right after it came  out and wrote a post about it. It’s no coincidence that the quotes that he pulled out convergently tugged at me.

The liberal arts degree has become tech’s hottest ticket, allegedly.

Some points for students about technology in the classroom. Here are some non-tech-phobic thoughts about how students might consider how they use technology in the classroom to help themselves learn, or do do well in class (which is not the same thing of course).

To the [UW] Eau Claires of the world, I say, keep fighting. No disrespect to Madison, or Boston, or New York City, but sometimes things look different from here. It would be nice to see that acknowledged before terrible decisions were made.”

White dreadlocks as cultural appropriation.

How do we build a diverse scientific community? Here’s a place to start:

Latino women and Black men had the highest levels of discouragement— half in the sample for both groups.

And who were the worst offenders?

Their college professors!  Almost half of those pointed to their college professors as the chief source their discouragement, and 60 percent reported they experienced dissuasion in college. African-American women were dissuaded the most by their professors — an alarming 65 percent.

Essay questions written by a first-year instructor who does not have the time or wherewithal to do the required reading.

George Washington University — (I’m sorry, it’s actually The George Washington University) — is no longer requiring standardized test scores for applicants. Before you think it’s about increasing diversity, evening the playing field, and just generalized sanity, keep in mind that the more parsimonious explanation is that they’re just gaming the university rankings, by attracting more applications and increasing their rejection rate.

A very high quality and easy-to-follow explainer about the fact of evolution from the BBC. Good for teaching non-majors, or alienating your creationist family members on Facebook.

The story about a renegade fishing vessel chased around the whole world by people committed to bringing them to justice, and to stop the illegal exploitation of the world’s fisheries. My gosh this was a good story and also a great lesson about the loosey goosey state of things once you leave the land.

Here is a great well-animated 4-minute explainer video about El Niño. Which actually is not as simple as people realize

There was yet another op-ed in the New York Times that sought to mock the idea of a university, or something like that I guess. Forget the original, but this response is worthwhile.

Reddit gonna reddit: “I fabricated some data for a term paper. My professor wants to publish it with me. What do I do?” Just in case that thread gets deleted or certain things get removed, here’s the web archive of as of Thursday morning.

On being the only one in the room.

This is the best thing I’ve ever read about the danger of DWB, by Tressie Cottom.

Why IFLScience is anti-science

In a public relations coup, the meth lab explosion at the NIST has actually not been in the news! This is the only update I could find, which is intriguing.

Why we work so much. Accompanied with interesting data.

Wait, so General Chemistry doesn’t help you do more advanced chemistry?

People who work with arthropods in biodiversity and community ecology projects often fail to store vouchers. The crustacean people are particularly bad about it. This is problematic. (And yeah, I think I’m part of this problem.)

No victor believes in chance.

Why being a straight A student isn’t necessarily a good thing.

Suicide on campus and the pressure of perfection.

Most climate models have most of southern Florida underwater in a hundred years. Yet the people in Miami are acting like this isn’t even happening. It’s totally bizarre. And it’s particularly problematic because the whole city is on porous limestone, so levies and similar machinations won’t do the trick. Here’s a story from The Guardian about the state of denial in Miami, which already is experiencing major problems from the tides.

Classroom observations are only really useful if the observers are capable and appropriate for evaluating. Considering that almost no college faculty are trained in pedagogy, who is qualified to evaluate teaching at the university level?

Just in case you somehow haven’t yet seen the Key & Peele Teaching Center video:

And not least by any means, is Ta-Nehisi Coates’ new book, Between the World and MeI’m halfway through it now, and I’m finding it revelatory.

Have a great weekend.

The folly of expecting institutionalized funding

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When a child is raised, we provide them with a home, food, education, love and encouragement. Within a couple decades, give or take, the kid grows up and is expected to care for itself.

You can’t really expect the same of federally funded ventures.

Yes, sometimes research and education ventures support themselves after the funding runs out. But it doesn’t often work like that. Organizations are not people. (Even if Mitt Romney and the Supreme Court attempt to claim otherwise.)

If an agency wants something, then they can fund it. But when they stop funding it, then they’re saying that they don’t want it anymore. But it’s a grandiose hope that a funded venture can somehow exist in perpetuity because it was funded for a while. Continue reading

I’m going to stop ignoring ResearchGate

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LinkedIn, Facebook, ORCID, Twitter, Instagram, Klout, Mendeley, ResearchGate.

I’m signed up for all of these things. Some are useful, some can be annoying, some I just ignore.

Some vague time ago, a friend in my department mentioned that I should sign up for ResearchGate. I said something like, “It’s just another one of those social networks, yadda yadda so what.” But I signed up anyway*.

At the time I signed up, I halfheartedly connected some of my papers, and since then I’ve ignored it. Jump to last week, when one of their emails was creative enough to find its way through my spam filter:

rgateclipI was like, huh? I chose to click over to my profile on ResearchGate.

Continue reading

Recommended reads #56

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Some fundamental lessons from ten years of sciencing.

You know you want to look at this church shaped like a chicken.

A meth lab at the National Institutes of Standards and Technology exploded. I imagine more news will be forthcoming. I don’t know what is driving NIST employees in exurban Maryland to operate a meth lab.

A librarian is caught after having stolen more than hundred masterworks of art from his institution, and replacing them with his forgeries. His defense? Everybody else is doing it.

Workaholism isn’t a valid requirement for advancing in science.

When the end of human civilization is your day job. This is a great piece that discusses how scientists handle, think, feel, and discuss climate change, in Esquire. (Better than the testosterone-laden books-for-dudes list that came out in Esquire.) But the best thing I’ve ever read about how to feel and talk about climate change came from Hope Jahren.

The myth that academic science isn’t biased against women. This is an information-laden explanation why that PNAS paper (which claimed that the bias problem in hiring is over!) is just really off target.

There’s been a long-growing academic issue here in southern California that’s now amounted to a pretty big stink-up. USC has always been known as a place that has good athletic programs, but not so much for academic excellence, notwithstanding the fact that wealthy people who graduate from the so-called “University of Spoiled Children” often end up in powerful positions, and then go on to hire their fellow Trojans. Despite the social capital of USC, it’s alway been considered as an academic minnow compared to UCLA and pretty much every other major research institution in the region. (Not that I feel good about slighting one kind of fish over another.) But in the past decade, things have changed for USC, they’ve really stepped up their game in attempting to fix what was their miserable academic reputation. Lately, people are actually speaking highly of their academic programs. They’ve done this on a short time scale, and a big part of this strategy has been to absorb pre-existing facilities and programs. The latest poach is a research group from UCSD, that runs a huge Alzheimer’s research program. UCSD isn’t just letting USC take the whole program that easily, though. Says the provost of USC, “I don’t want San Diego to feel like the University of Southern California is being some threat.” This comes one year after USC attempted to subsume the Scripps Research Institute, in a secret deal with Scripps administration. The plan only ended at the last minute because someone leaked the news out to faculty before the deal was finalized. So, USC is basically trying to cash in its huge endowment to buy an academic reputation over a very short period of time. Which for people who care about reputations, I guess that’s fine, but the problem about doing this too quickly is that you end up screwing over people who are currently in the system.

So the career/editorial section of Science is just totally f’ed up. But Nature is noticeably less horrible. Especially this piece about how science professors need leadership training. So, so much this.

Also, this comment in Nature about improving undergraduate science education is a really great blog post. I mean, um, peer-reviewed publication in Nature. Same difference, right?

A book review of Field Notes for the Alpine Tundra. I don’t have plans to get up to the tundra anytime soon, but the review sure makes me want to pick up this book.

Why it’s not a good idea to kill venomous snakes in your yard. Just imagine the productive conversation this would lead to on Facebook.

A listicle of ten myths about teaching computer science.

This is a good post about the need to recalibrate the professional expectations of those into graduate school. Grad school is research training and a low-paid job, and also preparation for a great number of other things, if you go about it that way.

David Raup recently died at the age of 82. If you’re not familiar with his contributions to our understanding of the history of life, this obituary is a great explainer.

What do climate deniers talk about when they meet and talk about climate? It’s all pretty weird, apparently.

This transcript of the conversation that led to Sandra Bland’s arrest is infuriating and heartbreaking. This is the first chapter of an actual tragedy. But if you read it line by line as you would a screenplay, then you can feel the hate and racism oozing from the police officer. What makes this all the more horrible is that this happens every day in America. Let’s keep paying attention to this, to emphasize that black lives matter.

On a related note, renowned putz David Brooks penned a confoundingly ignorant review of Ta-Nehisi Coates’ new book. Here’s a great piece making fun of Brooks’s review. Here’s another one that explains how, if not why, Brooks is such a dumb person. I haven’t read the book itself, I am looking forward to it.

Are you heading to China but don’t know if the government firewall will let you use a certain website? Here’s a site you can use to test things out ahead of time.

How do you measure a scientist?

What happens when you talk about salaries at Google.

Have a great weekend.

A departmental retreat from another dimension

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I once participated in a departmental retreat from the Twilight Zone. Or it might have taken place in an alternate-universe wormhole.

Details are fuzzy, but when I searched my google calendar, I found it still sitting there, way back from Spring 2006. There I remember a few things with uncommon clarity, on account of the weirdness. Continue reading