NSF Graduate Fellowships and the path towards equity

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When I visited the SACNAS conference some weeks ago, I spent most of my time in the exhibit hall, chatting with students at their posters and scoping out the institutional recruitment tables. A few organizations had primo real estate, with a large amount of square footage right by the entrance. They had a small army of representatives, always busy with students. The ones that I recall include USC, Harvard, and NSF.

There’s no doubt that NSF is serious about its institutional mission to develop the most talented scientific workforce in this country, which means we need scientists from all backgrounds. If you think that NSF isn’t committed to the recruitment of underrepresented minorities (URMs), you probably don’t have a lot of experience with NSF. They not only care, but they also put a lot of thought into how to do it right. Continue reading

Parade of professors or solo scholar?

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There are two basic models for teaching courses and the norm varies a lot depending on the type of ecology course. A single professor was responsible for the majority of classes I took as an undergraduate. However, these days the courses I’m involved with are done by a series of professors for particular subtopics. The contrast has me thinking about the pluses and minuses of these approaches. Continue reading

NSF makes its graduate fellowships more accessible

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The US National Science Foundation has changed a rule for their Graduate Fellowships. As of next year, grad students can only make one attempt at landing a graduate fellowship, which is intended to increase the proportion of awards going to undergraduates. Continue reading

Useful science communication resources

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Inspired by my own endeavours in science communication and an informal talk I gave to my department, I started to think about offering a course. There isn’t anything like that for PhD students so I went through a few easy hoops and got approval to give a short course on science communication. We finished up the meetings last week and I thought it might be useful to collect and share all the information in one place. Keep on reading if you’re interested in running your own version of such a course or if you are looking for information on topics in science communication. Continue reading

There are lots of opportunities for grad students to learn how to teach

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In my last post I complained that grad students don’t generally get taught how to teach in grad school, despite the fact that they are (arguably) there to be trained for a career that requires them to teach. Thanks very much to everyone who commented! As a result of both the comments and getting more information about TA training at my current university, I’ll now write about how there are in fact a lot of opportunities for grad students to learn how to teach. You just have to put a bit of effort into going out and finding them. Continue reading

Why aren’t grad students taught how to teach?

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The biology departments at the university I attended for my MSc and the one I just started at for my PhD both have courses for new grad students that are meant to be an introduction to the skills they will need to be successful in grad school and beyond. One is called “Basic skills for a career in science,” which is pretty self-explanatory. The other is called Professional Skills Development “Philosophy and methods” and is “intended to be a forum for students to enhance their current skills and understanding of how to do ‘good’ science and to discuss some issues that they will encounter as scientists.” One used to be optional and is now mandatory; the other used to be mandatory but is now optional. (updated)

The course I took included writing grants and abstracts, making scientific posters and presentations, effective data presentation, time management and advisor-advisee relations, the publication process, and ethics. The one I haven’t taken appears to cover somewhat similar topics. Neither mentions teaching, which I’m pretty sure is an essential skill for a career in science. Continue reading

Practicing what you preach (or rather teach)

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I have been fairly absent from here over the last many months. I’ve wanted to write and even started a few posts but they never got completed. The clashing of personal (husband’s surgery) and work stresses (major grant applications that will allow me to continue my position in Sweden) this spring made for a hectic time. I never really regained my balance before summer started. And well, I’m a field ecologist at heart, so between fieldwork and vacation the weeks have flown by. The end result is that I’m out of the habit of writing regularly and I miss it.

As the fall approaches and regular schedules settle in, my plan is to practice what I’m about to teach. Continue reading

Working away from work and making work home

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Guest post by Rosie Burdon, a PhD student at Uppsala University in Amy Parachnowitsch’s lab. She is studying interactions between Penstemon digitalis and its pollinator Bombus impatiens in eastern USA. Here she shares her experiences of spanning multiple countries for a PhD and the benefits and challenges of having the USA as your long distance fieldsite. You can find her on Twitter at @RealRBurdon.

I love my job, it’s a 4-year contract asking questions about nature and ultimately answering some. Yes, it is a real job mum. Specifically, I get paid to ask questions about what plant volatiles and nectar rewards mean to bees/plant reproduction. I don’t do this in the country that employs me, or even the country I was born in. I moved from the UK to Sweden to work (where I spend most of my time) but I do my fieldwork in the US or else dwell in university of Salzburg labs. Continue reading

The acceptances that weren’t acceptances

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Chatting with people at La Selva Biological Station in Costa Rica, the topic from a recent post came up: that journals have cut back on “accept with revisions” decisions.

There was a little disagreement in the comments. Now, on the basis of some conversations, I have to disagree with myself. Talking with three different grad students, this is what I learned:

Some journals are, apparently, still regularly doing “accept-with-revisions.” And they also then are in the habit of rejecting those papers after the revisions come in. Continue reading

Academic Hazing

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A recent conversation* on twitter made me think about academic customs. The conversation centered on PhD comprehensive exams (PhD candidacy in the US system that happens about halfway through the PhD) but applies to all gate keeping parts of a PhD (or Masters) program. These can vary a lot between countries, universities and even departments (I wrote about the defence a while back). But this conversation was basically about how these hoops/tests can drift towards a hazing function rather than a learning or career building function.

Let me just get my opinion out from the first. I don’t think hazing is useful, respectful or professional. Full stop.

But one of the things that struck me is the difference between true hazing and an experience that can feel like hazing or at least slightly ritualized torture but in hindsight really isn’t. I’m one of the lucky ones it seems in that my experience was more the latter. Continue reading

Graduate training, missed opportunities and the good ol’ days

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A couple of recent conversations have got me thinking about the culture of academia and grad school training.

The first conversation relates more to the general culture of academia. The complaint was that these days people are very selfish; they don’t want to participate in departmental events or even come into their office unless there is a very personal benefit they can see. The research groups are little islands and everything is about me, me, me. Young professors and graduate students aren’t thinking about how that can and should contribute to the academic community but rather always focused on what they need to do for themselves and/or their group. Now we can debate about whether or not this is really the state of academia or even if it is true for the particular department that was being complained about but it is an interesting thing to think about. In these days of extreme competition, for grants, positions, paper publications, and on and on, are we becoming too focused on ourselves? Is it really all about me? Continue reading

Is grad school a good time to have a baby?

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I have no clear answer and I had my daughter just after finishing my fourth year…

A post on having kids in grad school has been on my roster basically since I started blogging. I sometimes get asked this question because I had a baby in grad school. While contemplating what to write, I realised I actually know quite a few mothers who started their families in grad school. Some have gone on to continue their careers in academia while others made the decision to leave. Although motherhood plays a part of their personal stories, the mothers I know are not unlike the general population of grad students I came through with, who are all also trying to find their way and decide what to do with their lives and careers.

So last year, I decided that to ask all the people I knew who had babies in grad school about their experiences and what advice they would give to the question “Is grad school a good time to have a baby?”. The one thing that these parents all have in common is an enthusiasm for the idea and a lack of follow through (including me!). I posed the question but then got caught up with other things as I’m wont to, just like I’m sure all the other parents who said they’d like to contribute but ended up being far too busy to write about it. Instead of pestering them after having dropped the ball before, I thought I would write my own perspective first.

What follows is a modified email that I sent to a female grad student who directly asked me for advice on whether grad school was a good time to have a baby. One thing that did come to mind when thinking about this question is that I come from a supportive department in this respect and it clearly shows in the number of grad school babies that born there. So my answer to the question is coloured with the privilege of support, both from my advisor and department. Many are not so lucky.

My advice and perspective is also skewed towards mothers, although I know grad school dads as well. Part of the challenge of having a baby during grad school for a woman is, well, having the baby. Although parenting can be a lot more equal pretty quickly as long as both parents make an effort for it to be, the burden of pregnancy and breastfeeding (if you can/do breastfeed) falls squarely on the mother. There are real physical aspects of this time that means extra support and consideration for mothers that I think shouldn’t be ignored. You’ll see some of that perspective in what follows.

Here is my advice from a couple of years ago to a fellow grad student* pondering having a baby before finishing:

I seriously feel unqualified to offer advice–somehow I managed to make it through but I’m still not sure how. So I’m not sure I have wisdom but here are a few thoughts. First, they always say there is never a good time to have kids and although its true, you should never let that stop you. It is a tough thing to plan and it is always more of a crazy disruptive thing then you imagine it will be. But it is also amazing so if you want it I would say give it a try–you will always make it work somehow–sometimes things go a little slower than planned or differently than planned but that is all part of it. I think you will make your priorities happen–if you want the baby and want the PhD, you will make it work. My story was that I did manage to have a double TA at the end and that helped a lot. But I did it in the opposite direction from (another grad student)–I took off a semester (‘writing’)/had Maiken and then double TAed. Somehow I managed to come back, double TA and finish. I think that had a lot to do with the fact that my committee was very forgiving—I am still working through publishing my chapters and sometimes I am amazed they let me go**. And of course, having a supportive spouse is huge–I couldn’t have done it without my partner’s help.

I think everyone’s situation is unique though. I thought I would do some writing when I was off but I did next to nothing those first few months. The birth was a lot harder than I had hoped (I had to have an emergency c-section). The recovery took more out of me than I thought–emergency means bigger cut and it was a while before I could even get out of bed normally. I also did not do well with the sleep deprivation so that made it tough to think and function–the hormones also can make you a little crazy and seriously effect your brain function. No one told me that I would be more forgetful once I became pregnant, for example…. Not to scare you but things can go in unexpected ways and although it is totally doable, pregnancy/breast feeding, etc is definitely a draining experience–but you will roll with those things as they come and they shouldn’t stop you. And many people have it much easier than me and hopefully you will too!

Ultimately, the decision should be up to you and your partner, so in some ways, I don’t think you need to talk to anyone officially until it is certain you are having a baby. Then the logistics can be worked out as they need to be and my experience with the department is that they are pretty supportive. My opinion is that it is your right to have a baby so they need to deal with it and they want you to graduate so they’re going to work with you to make that happen. When I passed 3 months, I went to my advisor and then my committee and the department chair. I basically started by saying I was pregnant and I had a rough outline of a plan of how to finish up. My biggest request was the double TA*** and they were good enough to give me that. I think they thought I was a little crazy and that I would not manage moving to Sweden, having a baby, coming back and defending but they were definitely supportive. I did lose one committee member because they wasn’t around when I needed to defend but everyone was fine with that and since I had four members I didn’t need to replace them. I guess you just should be prepared to be a little flexible and figure out what is feasible but I think it is definitely possible to manage it.

Having a baby is always going to be a huge disruption of everything else in your life and they only continue to be that. But grad school isn’t a bad time to start. You’re time is actually pretty flexible. So even though it was crazy busy, I’d do it again. The writing/stress of finishing always seems about the same to me, whether or not you have a baby (at least from watching other people). You basically fill up the time. When you have something else so huge going on, you are forced to work more efficiently and not worry about it so much. Revisions can always go on forever, when you don’t have forever, you basically have to stop. Part of the reason I am still working on things from my PhD is because I am trying for good journals so that is also a choice…

Anyway, personally, I wouldn’t ask permission/talk to anyone that I thought would try to dissuade me from doing it, at least if they were in a position of power. If they try to say it isn’t for the best and then you do get pregnant you’re possibly creating unnecessary tension. But once you are pregnant, it isn’t like they can advise you not to be. So the discussion will hopefully be more productive and positive about how to make it work.

I hope this ramble makes some sense. Follow your hearts, do what feels right and it will work out.****

So in short, is grad school a good time to have a baby? It was for me.***** I have a wonderful/stubborn/imaginative/annoying/beautiful/challenging/creative daughter and so far a career in science that I love. I wouldn’t change any of it. But having a baby is a deeply personal choice and I don’t think anyone can truly answer for another whether any particular time is ‘good’ or not.

 

*I’m happy to say said grad student now has a lovely daughter and PhD degree.

**Impostor syndrome alert: I had one published chapter and three manuscripts at the time of my defence. Not such an uncommon combination…but I had high expectations of myself and was disappointed that I hadn’t submitted more at that point.

***My salary support was through TAships and doing all my teaching duties in one semester instead of spread across two meant that I could come to Sweden and be with my partner during the first few months of my daughters life (her due date coincided with the start of the fall semester)

****I tend to live by this philosophy, although the ‘working out’ might not be how you first imagined.

*****A recent twitter conversation about grad school stipends directly relates to the finances of being a parent in grad school. I didn’t have to support my family on my stipend, nor was I a single parent, important distinctions.

The field ecology of a gut microbe inside bullet ants

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The bullet ant Paraponera clavata. Image by Alex Wild.

The bullet ant Paraponera clavata. Image by Alex Wild.

This is the latest paper from my lab, which I’m really excited about. When we designed the project, several people told us that it would be useless. “It’s pointless to study the ecology of a symbiotic microbe in the wild when we have yet to specify its function inside the host.” It was only two days ago that Meg Duffy said that the microbiome is the most important recent conceptual advance in ecology, and I agree with her. That’s one of the reasons we did this project, to look at the ecology of gut microbe in the wild, which appears to be a true frontier.

There are plenty of advances that are yet to be made in the field biology of microbes, and these discoveries do not have an a priori requirement understanding of the comprehensive biology of an organism before understanding its ecology.

The microbial contents the guts of bullet ants are remarkably heterogeneous. In some colonies of bullet ants, we found oodles of a particular Bartonella microbe, closely related to those that facilitate N cycling in other animals. And most closely related (as far as we know) to other Bartonella inside ants on other distant continents. But, many bullet ant colonies lack this microbe. Perhaps not by accident, bullet ants have a remarkably varied diet, and some colonies eat more insects than anything else, and other colonies are functional herbivores. Perhaps the presence of this N-cycling microbe might be associated with – or even respond to – the trophic position of the ants?

Aren’t we getting ahead of ourselves by studying how diet affects microbes in the wild, when we don’t know what the microbes do? I say, phooey. Most of the ants that we study in tropical rainforest are just as mysterious as microbes. We don’t even know what most species of ants even eat! Nobody tells me I can’t study the ecology of ants without doing a comprehensive study of their diets and relationships to other organisms in the ecosystem. So, why do we need to know exactly what the role of microbe is in the gut of an animal before working to understand its distribution and ecology?

Working out the function of these microbes is mighty damn hard, if not impossible at the moment. But we can understand the distribution of these critters among colonies of ants an understand the environmental factors that shape its occurrence, as well as doing experiments to see how we can make incidence increase or decrease.

So, we ran an experiment that gave the ant colonies supplemental carbohydrates, or supplemental protein. (This was not easy at all, though you might think it would be. A post on this is forthcoming.) And we checked to see if how the microbes responded. It turns out that when you feed colonies sugar, this microbe becomes more prevalent. Moreover, the results from the manipulation recapitulate the ambient relationship between diet and microbial prevalence. Some colonies consistently collect more sugary nectar from the canopy than other colonies. (Learning this involved going out into the forest in the middle of the night, for an entire summer, to measure bullet ant colony diets.) The colonies that collect more nectar are more likely to have this microbe. So, we can clearly conclude that a sugary diet is predictive of the incidence of this particular Bartonella inside bullet ants.

And the stable isotopes tell an interesting story, too.

So what does this mean? While most ant species that forage in rainforest canopies are functionally herbivorous, bullet ants are true omnivores. They also don’t have the specialized obligate N-cycling microbes that the more herbivores canopy ants have. We found that the close bullet ant diets get to their competitors in the canopy, the more likely they have this facultative N-cycling microbe. If we’re trying to understand how the evolution of obligate sugar-feeding evolved among the dominant ants of rainforest canopies, then I suggest that understanding the ecology of the facultative bullet ant/Bartonella association is to get a window into the evolution this form of dietary specialization.

How this project happened inside a teaching institution

This was the Master’s thesis project of Hannah Larson. Hannah came to my lab with a specific interest in doing field ecology. Based on preliminary finds predating her arrival, Hannah and I developed this project in collaboration with Shana Goffredi, our microbial ecology collaborator. After taking courses for a semester, Hannah headed to the rainforest for eight months to conduct this project at La Selva Biological Station. Hannah found, marked and measured over a hundred bullet ant colonies (which became the start of a long-term monitoring project), and overcame a series of challenges in getting the molecular work done in a rainforest field station (with substantial help from our collaborating lab at the University of Costa Rica). Undergraduate Erica Parra is the one who (by her own choice I should point out) spent long nights in the pitch black of the rainforest at the base of actively foraging bullet ant colonies. The work was funded by an NSF-IRES grant OISE-1130156, though we scrambled for additional funds for reagents that were not in the project budget.

Reference:

Larson, H.K., S.K. Goffredi, E.L. Parra, O. Vargas, A. Pinto, T.P. McGlynn. 2014. Distribution and dietary regulation of an associated facultative Rhizobiales-related bacterium in the omnivorous Giant Tropical Ant, Paraponera clavata. Naturwissenschaften. DOI: 10.1007/s00114-014-1168-0

You can find a copy of this paper on my lab’s website.

Thoughts on the PhD defence

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Last Friday there was a PhD defence in our department and Terry’s post about open defences in the USA got me thinking about the different cultures surrounding PhD defences. The first thing that came to mind is how different they can be, from country to country, university to university and even from department to department within universities.

A few axes in which defences can vary:

  • defence versus none
  • an open versus closed defence
  • external examiner(s) versus none
  • student presentation versus none
  • external examiner gives a presentation on  or not
  • official book printed prior to or after your defence
  • who makes the decision (a unbiased committee or one that has been involved throughout your PhD)

So, why so much variation?

Well clearly, some variation might come about from outside sources, such as the law. Much of the variation might simply arise from traditions of the university and culture (we’ve always done it this way…). But this got me thinking about the purpose of a PhD defence. In our teaching it is always better if we have defined goals and learning outcomes of the activities we do and a PhD at its core is fundamentally a learning process. Being a bit new to the other side of the equation, I don’t really have any idea about how much discussion is given to the purpose and expectations of the defence in departments. Are there clear objectives? What is the point? What does it all mean? These questions and many more may drive the form of the defence across universities. Clearly there could be a difference in the form of a defence where the main purpose is to evaluate the quality of the work versus where it is seen as a time point to gather your various projects into a cohesive story (and presumably the evaluation of the work has been done earlier, e.g. in the decision that you’re ready to defend). [Update: scroll down to the comments for a much more detailed examination of the purpose of a PhD defence by Paul Klawinski]

When I started writing this post I realised that I don’t have strong opinions about how a PhD defence ‘should’ be. It seems to me that there are lots of different and equally good ways of awarding PhDs. What constitutes ‘good’ will likely vary a lot based on how the entire program is formulated. But seeing different traditions now in Sweden has opened my eyes to some of the benefits of doing things differently. And thinking more seriously about PhD defences has gotten me thinking about the broader potential impacts of the event beyond being able to call yourself Dr. afterwards.

First maybe I should lay out my own experience on the table so that my biases are in the open. I have a degree from the USA and so my defence went something like this: I handed in my dissertation to the committee that I had throughout my PhD a few weeks before the day, I gave a seminar (50 mins) on my research to the department and answered questions, then I went into a room with my committee and talked with them. They sent me out of the room and talked about who knows what while I waited (the time went on forever…). Then they brought me back and congratulated me (hooray!). I think I might have been told that an open defence was illegal somewhere in the planning but honestly with juggling a baby, an international move and finishing up, that time is a bit hazy for me….

What I liked about the process that I went through is that it gave me a defined goal to work towards for ‘finishing’ writing. In my department you only print bound copies of your dissertation after the defence. That means there is still more to do and you need to incorporate changes that your committee suggests. But the seminar gave me a chance to communicate with my department and let them know what I had managed to do in my time there. So although it was a little stressful, I appreciated having a defence rather than not. I think I benefited from doing mine. It was the first full length seminar on my work, for example. And getting through your defence is definitely something to celebrate.

I’m not sure what it would have been like to have an open defence. The ones I’ve been to so far here in Sweden are much more focused on the details of the papers included in the dissertation. To be honest, I didn’t really feel like I was defending anything in my ‘defence’. In fact, my yearly committee meetings were always much harder and challenging than my defence and that wasn’t a bad thing. It made sure that my progress was going in the best possible direct rather than challenging details after it was too late to change them. So my committee and I talked very little about my dissertation but they focused more on big picture ideas. It was a really a great conversation that got me thinking about my place in science and how I could contribute. I think I’m still learning that but it was a wonderful broadening conversation. I was definitely asked some challenging questions in that closed-door portion of the defence, but I wasn’t actually defending my specific papers as I’ve seen more recently. Even in my former department, I think what constitutes the defence varies a lot between students but I appreciated the form mine took.

One thing I think I might have missed out on with an internal defence with my committee is that I didn’t get a chance to have an in depth conversation about my work with someone from the outside. Watching the defences here in Sweden, I am beginning to appreciate how valuable that can be. I know of a number of people who ended up doing a post-doc with their external reviewer. It seems like a great way to meet and interact with a leader in your field and also gives them a chance to get to know you. I also know of another example of a paper that came out of discussions during the defence. Generally the process seems like a great way to connect with someone and in our department the external examiner also gives a presentation about your work to put it in a broader context. In a way, this gets them to be an advocate of the student and really get to know their work. So even if future collaborations aren’t an outcome, you’ve had someone new think deeply and carefully about your work. However, if I had an external examiner for my own defence, I don’t think I would have had the same kind of interesting conversation as I did. It could have been just as good but likely pretty different.

So overall, I can see benefits to different PhD defence styles but unfortunately you can’t do everything…

What are the traditions at your department? Are there active discussions about what could be broader outcomes of the process of the PhD defence (besides a point where you can pass/fail a student)? And please share more extended outcomes of the PhD defence process! I’m sure I’ve only scratched the surface in this post.

Public thesis defenses are illegal in the USA

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In the United States, PhD students defend their thesis with a public presentation. After this presentation (or sometimes, on another day), the student has a private session with the dissertation committee to evaluate whether the student earned a doctorate.

This practice is legal.

In some other countries — and in some departments in the United States as well — the doctoral students are evaluated by their committees publicly after their thesis defense talk. I’m not naming departments in this post, though several have been brought to my attention in recent days.

In the US, this practice is illegal.

Public oral examinations violate FERPA, the Family Educational Rights and Privacy Act. Just as it is illegal to post the grades of students with personally identifying information (without prior consent), it’s illegal to administer an oral exam with spectators. I’m not a lawyer, but my reading of the plain-language summary of the bill is mighty unambiguous.

For a thesis defense to be legal, everybody needs to be directed to leave once the public presentation is finished. Alternatively, the student and the committee retreat to a private area for the evaluation.

As long as the defense is genuine, in which student performance is being evaluated, and there a nonzero (though infinitesimal) probability of failure, then it cannot be public unless the student has specifically waived privacy.

I understand that the public grilling of doctoral candidates may be a time-honored tradition. If a student isn’t prepared to have their thesis publicly grilled, then the student shouldn’t be allowed to advance to this stage of the process. However, the public evaluation of the candidate’s performance for work towards the degree is simply straight-up illegal. There are a variety of legitimate reasons that a student may have for wanting to keep the evaluation process private.

When rights protected by FERPA have been violated, students may not sue the institution for damages. However, the overt violation of FERPA can threaten federal funding. Departments that publicly evaluate the performance of doctoral candidates in public are, at least in theory, putting the university at risk.

My have my own misgivings about public defenses as a faculty member, though it’s not about privacy. It has to do with the rigor of the process. While having a public defense might be seen as transparent and a sign of rigor, on the other hand it also can inhibit the members of the committee from providing an adequate evaluation. While there is a stereotype that professors can be vicious with arrogant questions and out to take students down a notch to inflate their own egos, these individuals aren’t that common. More often, committee members may be concerned about the appearance of collegiality and don’t want to be seen as unfairly attacking an unprepared student. If a student hasn’t truly done the work meeting the standard for the doctorate, the levy of that assessment would be unnecessarily cruel in public. Inadequate theses shouldn’t ever come to the defense stage. But by a product of flawed personalities and bad politics, this happens at times. A private defense might be the best way to deal with these occasions. Of course, a private defense also can cause an overstuffed committee member to unfairly sabotage a candidate. That is a flaw in the prevailing model in the US.

I don’t know which one is better. But I do know which one is legal.

Thanks to Canadians Alex Bond and Andrea Kirkwood, with whom I discussed private/public defenses on twitter. I can’t tell you anything about Canadian law, are they still a monarchy?

How all ecology grad students can benefit from an OTS course

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If you’ve only just started grad school, or if you’re getting ready to finish, there are a ton of great reasons to take the OTS course this summer. The Organization for Tropical Studies courses aren’t just for tropical biologists, and the experience is useful for all ecology grad students.

  • Breadth of research methods — Gain experience in running experiments in a great variety of biomes, fields, and taxa. No matter your speciality, it can be useful and important to know how to mark insects, do biogeochemistry and microbial ecology, dissect flowers and do pollination experiments, mist net birds and bats, make and analyze sound recordings, and much, much more.
  • Making connections — You will work very closely with a large number of faculty from universities all over the United States and elsewhere. More important, you’re in the course with a bunch of other grad students who are typically fun-loving and academically talented. The course is work hard-play hard environment and you’ll go back home with new friends and colleagues, some of whom you’ll stay in touch with for the remainder of your career. You want to emerge from grad school with a network that goes well beyond your own institution. This is a great way to make that happen.
  • Experimental design — This course will have you designing and conducting experiments at many different sites in small groups. This really helps you learn how to develop the right questions, design the most appropriate experiments and that you’ve had the best analysis in mind the whole time.
  • Data analysis — Because you are involved in so many experiments, you gain experience with may kinds of analysis. The course has expert faculty including well-recognized statistical gurus who communicate in common English. You’ll get training in R to give you the tools that you need.
  • Science communication skills — Learn how to produce media that communicate your science with the public, by working with PhD scientists/filmmakers. Here are the tremendous results from a brief science communication project on the OTS course, from a post on the National Geographic Explorers Journal. The course runs its own blog and you have an opportunity to create podcasts and posts.
  • Experience with conservation in action — You’ll have the chance to interact with land managers and conservation professionals on the sites of ongoing projects. If you’re thinking about getting into the this aspect of the ecology business, you’ll have experiences and opportunities with making connections.
  • Tropical nature — If you haven’t ever spent time in the tropics, the biological diversity is stunning compared to the meager biota of the temperate zone. You get to see these biomes in the company of researchers who are experts in this environment and conduct a number of experiments. If you want to learn natural history and biodiversity, this is a chance to be in the field with the experts who can show you what you what to learn.
  • Units — You get six credit hours from the University of Costa Rica that (typically) count towards the coursework requirements of your program. So, there’s that, too.

Speaking just from my own experience, the course gave me so many skills — and ideas — that have been useful in many unpredictable ways. I’ve yet to meet anybody who has taken the course who has said it is anything short of incredibly useful, and I think everybody has rated it as a spectacular experience. In the course of your graduate career, it definitely is worth your time.

Here’s a pdf flyer with more info.

Here is the link to the course for summer 2014, with its list of great faculty and remarkable sites the course visits, and instructions on how to apply. The deadline for applications is just over a week away, but then there are rolling admissions afterwards.

Collected observations from travels among universities

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Invited seminars and job interviews offer a unique opportunity to learn (and remember) what grad school is like and how universities work. You get to have a lot of intentional sit-down conversations on a wide variety of topics. Spending time meeting new people and learning new stuff rocks. And when you chat with other people about themselves, and their work, labs and universities, you have a chance to put your own way of doing things in perspective.

I’ve had a few such opportunities in the past month. There were a number of recurring conversational themes and undercurrents. During these visits, you get to have conversations to learn not just about all kinds of research, but about how people chose the directions that led to their current trajectories. And, you often learn about how personal lives shape our research directions and priorities, both by design and by hap.

Here are some of the highlights. None of these observations are shocking news by any measure. But I was struck by the obviousness of these ideas and the frequency with which they emerged, even when I wasn’t looking for them:

  • Research universities are no longer primarily oriented towards training excellent scientists. They are now primarily oriented towards teaching students how to publish and to get grants. If a grad student develops the desire to become an excellent practitioner of science, this is probably going to emerge from the undergraduate experience.
  • Anybody currently building a future in the quantitative sciences needs to learn how to write code to promote their own research success. Being able to manage and analyze super-duper huge datasets (bioinformatics) is really useful.
  • High quantity data will never be a substitute for high quality data.
  • People need to get off their goddamn phones.
  • Genomics is now at the point when all flavors of biologists are in a practical position to figure out heritable mechanisms accounting for phenomena involving organisms in nature. For many kinds of questions, any species can now be a model system.
  • Most ecological theories are ephemeral, and are either myopic or wrong. The parenting of popular, ephemeral and myopic theories is the prevailing route to success.
  • It’s difficult to maintain the presence of mind to recognize the power of one’s own authority.
  • In ecology and evolutionary biology, women fall out of academic careers most heavily in the transition phase between from Ph.D. to faculty. Lots of parties are at fault, but the ones that seem to be the most significant are some senior faculty (of both genders) and some spouses. Deans have many opportunities to proactively make positive changes, but that rarely happens.
  • The number of students who want to do serious, long-term, field biology in the service of contemporary research questions has sharply declined. This limits our potential to answer some major wide open questions in biology.
  • Universities that maintain a strong faculty actively keep their professors from going on the market in search of greener pastures. Universities would not lose valued faculty members as often as they do, if they actually supported faculty commensurate with the degree to which they are valued. Once someone is driven to look for a new faculty job on the market, then it’s impossible to not take a great offer seriously, even when there are many good reasons to not move.
  • The beauty of life – both in biodiversity and our relations with fellow humans – is immense beyond words. Humanity might be ugly, but people are gorgeous.

A snapshot of the publication cycle

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I was recently asked:

Q: How do you decide what project you work on?

A: I work on the thing that is most exciting at the moment. Or the one I feel most bad about.

In the early stages, the motivator is excitement, and in the end, the motivator is guilt. (If I worked in a research institution, I guess an additional motivator would be fear.)

Don’t get me wrong: I do science because it’s tremendous fun. But the last part – finessing a manuscript through the final stages – isn’t as fun as the many other pieces. How do I keep track of the production line from conception to publication, and how do I make sure that things keep rolling?

At the top center of my computer desktop lives a document entitled “manuscript progress.” I consult this file when I need to figure out what to work on, which could involve doing something myself or perhaps pestering someone else to get something done.

In this document are three categories:

  1. Manuscript completed
  2. Paper in progress
  3. In development projects

Instead of writing about the publication cycle in the abstract, I thought it might be more illustrative to explain what is in each category at this moment. (It might be perplexing, annoying or overbearing, too. I guess I’m taking that chance.) My list is just that – a list. Here, I amplify to describe how the project was placed on the treadmill and how it’s moving along, or not moving along. I won’t bore those of you with the details of ecology, myrmecology or tropical biology, and I’m not naming names. But you can get the gist.

Any “Student” is my own student – and a “Collaborator” is anybody outside my own institution with whom I’m working, including grad students in other labs. A legend to the characters is at the end.

Manuscript completed

Paper A: Just deleted from this list right now! Accepted a week ago, the page proofs just arrived today! The idea for this project started as the result of a cool and unexpected natural history observation by Student A in 2011. Collaborator A joined in with Student B to do the work on this project later that summer. I and Collab A worked on the manuscript by email, and I once took a couple days to visit Collab A at her university in late 2011 to work together on some manuscripts. After that, it was in Collab A’s hands as first author and she did a rockin’ job (DOI:10.1007/s00114-013-1109-3).

Paper B: I was brought in to work with Collab B and Collab C on a part of this smallish-scale project using my expertise on ants. I conducted this work with Student C in my lab last year and the paper is now in review in a specialized regional journal (I think).

Paper C: This manuscript is finished but not-yet-submitted work by a student of Collab D, which I joined in by doing the ant piece of the project. This manuscript requires some editing, and I owe the other authors my remarks on it. I realize that I promised remarks about three months ago, and it would take only an hour or two, so I should definitely do my part! However, based on my conversations, I’m pretty sure that I’m not holding anything up, and I’m sure they’d let me know if I was. I sure hope so, at least.

Paper D: The main paper out of Student A’s MS thesis in my lab. This paper was built with from Collab E and Collab F and Student D. Student A wrote the paper, I did some fine-tuning, and it’s been on a couple rounds of rejections already. I need to turn it around again, when I have the opportunity. There isn’t anything in the reviews that actually require a change, so I just need to get this done.

Paper E: Collab A mentored Student H in a field project in 2011 at my field site, on a project that was mostly my idea but refined by Collab A and Student H. The project worked out really well, and I worked on this manuscript the same time as Paper A. I can’t remember if it’s been rejected once or not yet submitted, but either way it’s going out soon. I imagine it’ll come to press sometime in the next year.

Manuscripts in Progress

Paper F: Student D conducted the fieldwork in the summer of 2012 on this project, which grew out of a project by student A. The data are complete, and the specific approach to writing the paper has been cooked up with Student D and myself, and now I need to do the full analysis/figures for the manuscript before turning it off to StudentD to finish. She is going away for another extended field season in a couple months, and so I don’t know if I’ll get to it by then. If I do, then we should submit the paper in months. If I don’t, it’ll be by the end of 2014, which is when Student D is applying to grad schools.

Paper G: Student B conducted fieldwork in the summer of 2012 on a project connected to a field experiment set up by Collab C. I spent the spring of 2013 in the lab finishing up the work, and I gave a talk on it this last summer. It’s a really cool set of data though I haven’t had the chance to work it up completely. I contacted Collab G to see if he had someone in his lab that wanted to join me in working on it. Instead, he volunteered himself and we suckered our pal Collab H to join us in on it. The analyses and writing should be straightforward, but we actually need to do it and we’re all committed to other things at the moment. So, now I just need to make the dropbox folder to share the files with those guys and we can take the next step. I imagine it’ll be done somewhere between months to years from now, depending on how much any one of us pushes.

Paper H: So far, this one has been just me. It was built on a set of data that my lab has accumulated over few projects and several years. It’s a unique set of data to ask a long-standing question that others haven’t had the data to approach. The results are cool, and I’m mostly done with them, and the manuscript just needs a couple more analyses to finish up the paper. I, however, have continued to be remiss in my training in newly emerged statistical software. So this manuscript is either waiting for myself to learn the software, or for a collaborator or student eager to take this on and finish up the manuscript. It could be somewhere between weeks to several years from now.

Paper I: I saw a very cool talk by someone a meeting in 2007, which was ripe to be continued into a more complete project, even though it was just a side project. After some conversations, this project evolved into a collaboration, with Student E to do fieldwork in summer 2008 and January 2009. We agreed that Collab I would be first author, Student E would be second author and I’d be last author. The project is now ABM (all but manuscript), and after communicating many times with Collab I over the years, I’m still waiting for the manuscript. A few times I indicated that I would be interested in writing up our half on our own for a lower-tier journal. It’s pretty much fallen off my radar and I don’t see when I’ll have time to write it up. Whenever I see my collaborator he admits to it as a source of guilt and I offer absolution. It remains an interesting and timely would-be paper and hopefully he’ll find the time to get to it. However, being good is better than being right, and I don’t want to hound Collab I because he’s got a lot to do and neither one of us really needs the paper. It is very cool, though, in my opinion, and it’d be nice for this 5-year old project to be shared with the world before it rots on our hard drives. He’s a rocking scholar with a string of great papers, but still, he’s in a position to benefit from being first author way more myself, so I’ll let this one sit on his tray for a while longer. This is a cool enough little story, though, that I’m not going to forget about it and the main findings will not be scooped, nor grow stale, with time.

Paper J: This is a review and meta-analysis that I have been wanting to write for a few years now, which I was going to put into a previous review, but it really will end up standing on its own. I am working with a Student F to aggregate information from a disparate literature. If the student is successful, which I think is likely, then we’ll probably be writing this paper together over the next year, even as she is away doing long-term field research in a distant land.

Paper K: At a conference in 2009, I saw a grad student present a poster with a really cool result and an interesting dataset that came from the same field station as myself. This project was built on an intensively collected set of samples from the field, and those same samples, if processed for a new kind of lab analysis, would be able to test a new question. I sent Student G across the country to the lab of this grad student (Collab J) to process these samples for analysis. We ran the results, and they were cool. To make these results more relevant, the manuscript requires a comprehensive tally of related studies. We decided that this is the task of Student G. She has gotten the bulk of it done over the course of the past year, and should be finishing in the next month or two, and then we can finish writing our share of this manuscript. Collab J has followed through on her end, but, as it’s a side project for both of us, neither of us are in a rush and the ball’s in my court at the moment. I anticipate that we’ll get done with this in a year or two, because I’ll have to analyze the results from Student G and put them into the manuscript, which will be first authored by Collab J.

Paper L: This is a project by Student I, as a follow-up to the project of Student H in paper E, conducted in the summer of 2013. The data are all collected, and a preliminary analysis has been done, and I’m waiting for Student I to turn these data into both a thesis and a manuscript.

Paper M: This is a project by Student L, building on prior projects that I conducted on my own. Fieldwork was conducted in the summer of 2012, and it is in the same place as Paper K, waiting for the student to convert it into a thesis and a manuscript.

Paper N: This was conducted in the field in summer 2013 as a collaboration between Student D and Student N. The field component was successful and now requires me to do about a month’s worth of labwork to finish up the project, as the nature of the work makes it somewhere between impractical and unfeasible to train the students to do themselves. I was hoping to do it this fall, to use these data not just for a paper but also preliminary data for a grant proposal in January, but I don’t think I’ll be able to do it until the spring 2014, which would mean the paper would get submitted in Fall 2014 at the earliest, or maybe 2015. This one will be on the frontburner because Students D and N should end up in awesome labs for grad school and having this paper in press should enhance their applications.

Paper O: This project was conducted in the field in summer 2013, and the labwork is now in the hands of Student O, who is doing it independently, as he is based out of an institution far away from my own and he has the skill set to do this. I need to continue communicating with this student to make sure that it doesn’t fall off the radar or doesn’t get done right.

Paper P: This project is waiting to get published from an older collaborative project, a large multi-PI biocomplexity endeavor at my fieldstation. I had a postdoc for one year on this project, and she published one paper from the project but as she moved on, left behind a number of cool results that I need to write up myself. I’ve been putting this off because it would rely on me also spending some serious lab time doing a lot of specimen identifications to get this integrative project done right. I’ve been putting it off for a few years, and I don’t see that changing, unless I am on a roll from the work for Paper N and just keep moving on in the lab.

Paper Q: A review and meta-analysis that came out of a conversation with Collabs K and L. I have been co-teaching field courses with Collab K a few times, and we share a lot of viewpoints about this topic that go against the incorrect prevailing wisdom, so we thought we’d do something about it. This emerged in the context of a discussion with L. I am now working with Student P to help systematically collect data for this project, which I imagine will come together over the next year or two, depending on how hard the pushing comes from myself or K or L. Again it’s a side project for all of us, so we’ll see. The worst case scenario is that we’ll all see one another again next summer and presumably pick things up from there. Having my student generating data is might keep the engine running.

Paper R: This is something I haven’t thought about in a year or so. Student A, in the course of her project, was able to collect samples and data in a structured fashion that could be used with the tools developed by Collab M and a student working with her. This project is in their hands, as well as first and lead authorship, so we’ve done our share and are just waiting to hear back. There have been some practical problem on their side, that we can’t control, and they’re working to get around it.

Paper S: While I was working with Collab N on an earlier paper in the field in 2008, a very cool natural history observation was made that could result in an even cooler scientific finding. I’ve brought in Collab O to do this part of the work, but because of some practical problems (the same as in Paper R, by pure coincidence) this is taking longer than we thought and is best fixed by bringing in the involvement of a new potential collaborator who has control over a unique required resource. I’ve been lagging on the communication required for this part of the project. After I do the proper consultation, if it works out, we can get rolling and, if it works, I’d drop everything to write it up because it would be the most awesome thing ever. But, there’s plenty to be done between now and then.

Paper T: This is a project by Student M, who is conducted a local research project on a system entirely unrelated to my own, enrolled in a degree program outside my department though I am serving as her advisor. The field and labwork was conducted in the first half of 2013 – and the potential long-shot result come up positive and really interesting! This one is, also, waiting for the student to convert the work into a thesis and manuscript. You might want to note, by the way, that I tell every Master’s student coming into my lab that I won’t sign off on their thesis until they also produce a manuscript in submittable condition.

Projects in development

These are still in the works, and are so primordial there’s little to say. A bunch of this stuff will happen in summer 2014, but a lot of it won’t, even though all of it is exciting.

Summary

I have a lot of irons in the fire, though that’s not going to keep me from collecting new data and working on new ideas. This backlog is growing to an unsustainable size, and I imagine a genuine sabbatical might help me lighten the load. I’m eligible for a sabbatical but I can’t see taking it without putting a few projects on hold that would really deny opportunities to a bunch of students. Could I have promoted one of these manuscripts from one list to the other instead of writing this post? I don’t think so, but I could have at least made a small dent.

Legend to Students and Collaborators

Student A: Former M.S. student, now entering her 2nd year training to become a D.P.T.; actively and reliably working on the manuscript to make sure it gets published

Student B: Former undergrad, now in his first year in mighty great lab and program for his Ph.D. in Ecology and Evolutionary Biology

Student C: Former undergrad, now in a M.S. program studying disease ecology from a public health standpoint, I think.

Student D: Undergrad still active in my lab

Student E: Former undergrad, now working in biology somewhere

Student F: Former undergrad, working in my lab, applying to grad school for animal behavior

Student G: Former undergrad, oriented towards grad school, wavering between something microbial genetics and microbial ecology/evolution (The only distinction is what kind of department to end up in for grad school.)

Student H: Former undergrad, now in a great M.S. program in marine science

Student I: Current M.S. student

Student L: Current M.S. student

Student M: Current M.S. student

Student N: Current undergrad, applying to Ph.D. programs to study community ecology

Student O: Just starting undergrad at a university on the other side of the country

Student P: Current M.S. student

Collab A: Started collaborating as grad student, now a postdoc in the lab of a friend/colleague

Collab B: Grad student in the lab of Collab C

Collab C: Faculty at R1 university

Collab D: Faculty at a small liberal arts college

Collab E: Faculty at a small liberal arts college

Collab F: International collaborator

Collab G: Faculty at an R1 university

Collab H: Started collaborating as postdoc, now faculty at an R1 university

Collab I: Was Ph.D. student, now faculty at a research institution

Collab J: Ph.D. student at R1 university

Collab K: Postdoc at R1 university, same institution as Collab L

Collab L: Ph.D. student who had the same doctoral PI as Collab A

Collab M: Postdoc at research institution

Collab N: Former Ph.D. student of Collab H.; postdoc at research institution

Collab O: Faculty at a teaching-centered institution similar to my own

By the way, if you’re still interested in this topic, there was also a high-quality post on the same topic on Tenure, She Wrote, using a fruit-related metaphor with some really nice fruit-related photos.